Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G04
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 102 2e-22
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 81 8e-16
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 80 1e-15
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 30 1.4
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 102 bits (245), Expect = 2e-22
Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 8/174 (4%)
Frame = +2
Query: 20 QRFAAIAQEFYKTELKSVDFL-NTEVAANEINSWVSNTTQGKIPKLVDADDMIGM--VVL 190
+ F ++E + E+ VD++ N+ A + +N WV T+ KI L+ + M ++
Sbjct: 103 EEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNLIP-EGMFNKDTILC 161
Query: 191 IINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAXILRMP 370
++N +YFKGSW F N T+ G F +P V+FM F Y ESS I+ +P
Sbjct: 162 LVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFRYLESSTLGCQIVELP 221
Query: 371 YRSNKYAMYIIVPNSLTGLPRVLNSLS--DLRVEMNNLRE---RLVDVRLPKFT 517
Y K +M +++PN + GL ++ +SL+ L+ M +LR V+V LPKFT
Sbjct: 222 YAGEKLSMVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSHPEEVEVTLPKFT 275
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 80.6 bits (190), Expect = 8e-16
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 8/185 (4%)
Frame = +2
Query: 20 QRFAAIAQEFYKTELKSVDFLNTEV-AANEINSWVSNTTQGKIPKLVDADDMIGMV-VLI 193
+ F +EFY +E+ VDF+N A E+N+WV T+G I +L+ + + ++I
Sbjct: 71 EEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINSLTRLII 130
Query: 194 INTLYFKGSWRHQFPPNMTKPGPFYV--SPKSPKSVEFM--NVIDHFYYTESSNFDAXIL 361
+N +YFKG W+ +F T F+V S +S VE M + +FYY ++ ++
Sbjct: 131 VNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVNFYY--DADIKCRVV 188
Query: 362 RMPYRSNKYAMYIIVPNSLTGLPRVLNSLS-DLRVEMNNLR-ERLVDVRLPKFTFEYPSR 535
+PY + AM II+P +G+ + S+ ++ + L V+V +PKF
Sbjct: 189 ELPYSGDDTAMVIILPEEPSGIFSLEKSIDVEIMEKWRRLMINTTVEVSIPKFRLSQKLE 248
Query: 536 LNGVL 550
L +L
Sbjct: 249 LRSLL 253
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 80.2 bits (189), Expect = 1e-15
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Frame = +2
Query: 20 QRFAAIAQEFYKTELKSVDF-LNTEVAANEINSWVSNTTQGKIPKLVDADDMIGMV--VL 190
+ F I Q++Y ++ VD+ + E A +N WV T+ KI L+ A + M+ +
Sbjct: 66 KEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLI-APGVFNMLTRLT 124
Query: 191 IINTLYFKGSWRHQFPPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAXILRMP 370
++N +YFKG W F + F + + VE M F Y S + +L +P
Sbjct: 125 LVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFKYLHSDKYKCKLLELP 184
Query: 371 YRSNKYAMYIIVPNSLTGLPR-----VLNSLSDLRVEMNNLRERLVDVRLPKFTFEYPSR 535
Y + +M +++P+ GL R + ++D+ +++ R V+V +PKF +
Sbjct: 185 YVDTQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNSVSSQRPADVEVYIPKFKMTSEFK 244
Query: 536 LNGVL 550
LN L
Sbjct: 245 LNEAL 249
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Frame = -2
Query: 451 AQAI*NARQTRQRVRNNDIHRVFVTSIWHPQNLSVKITRFSVIEVIYNVHELHGLW---* 281
A A+ A+ R D+ + + HP + + VIEV Y H LW
Sbjct: 273 AGALAVAQSLRMVQTKYDLVCMVTPDVTHPTRRHLCVMYDHVIEVPYIQHRCRKLWSEKQ 332
Query: 280 FRRYVEWSRFCHIRWELVTPASFE 209
R Y +W F +W + +E
Sbjct: 333 SRMYDDWIEFSFTKWNCLNLVQYE 356
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 215 GSWRHQFPPNMTKPGPFYVSPKSP 286
G R+Q+PP M GPFY S P
Sbjct: 978 GQARYQYPPAMQHAGPFYNSQIQP 1001
>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 305 NVIDHFYYTESSNFDAXILRMPYRSNKYAMYIIVPNSLTGLPRVLNSLSDLRVE 466
+V+ H +YT+S + + + + Y+ + V + TGLP+ +NS VE
Sbjct: 895 HVMRHPFYTQSQSILSKNRKCFFLLVNYSRILEVLDKKTGLPKTINSTQPALVE 948
>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 219 LPLKYRVFIINTTIPIMSSASTNLGIFP-CVVFDTQEL 109
LP+ + I T P+M + TN+ ++P C VF T +L
Sbjct: 876 LPMSPAMGPIPTMQPVMGYSPTNIFVYPWCCVFHTVDL 913
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,013
Number of Sequences: 59808
Number of extensions: 354715
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -