Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G02
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   0.97 
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   3.9  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   6.8  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    24   9.0  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    24   9.0  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    24   9.0  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +2

Query: 104  NPDYNPGQVVIANPDPFF-SQPSNGP----SGNYEPISTGPAFVDF 226
            N  Y+  QV+     P F + P+N P    SG+Y PI   P F  F
Sbjct: 1543 NGGYSVIQVMDEGYSPVFVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 182 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 274
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 158 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 247
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 302 YLYETFTSHHGREGCRIAWVDNWD 231
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 159 EKKGSGFAITTWP 121
           E  GSG+A+ TWP
Sbjct: 148 EDNGSGYAMDTWP 160


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 152 FFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 256
           + +Q   GPS NY   +     V+  +PNY  + Y
Sbjct: 151 YIAQLVGGPSINYSTAAMLLGAVNIGNPNYEVQNY 185


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 146 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 247
           +P   +PS+ P       +  P   +F    YPP
Sbjct: 99  EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,122
Number of Sequences: 5004
Number of extensions: 30642
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)