Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G02
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.54
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 2.2
03_05_0517 - 25118232-25118730,25119002-25119273 28 2.9
03_02_0269 + 7001891-7002212,7003598-7004037 28 2.9
12_02_0219 + 15822050-15824896 27 5.1
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 5.1
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179... 27 6.7
04_03_0904 + 20717005-20718087 27 8.8
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 27 8.8
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.7 bits (66), Expect = 0.54
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 104 NPDYNPGQVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFN--HPNYPPKRYDNPLARG 277
+P+Y+P + P +SQPS S ++G D++ PNY P +P A G
Sbjct: 1773 SPNYSPTSPTYSPTSPSYSQPSPSYSPTSPYTTSGGPSPDYSPTSPNYSPSGSYSPTAPG 1832
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 142 VRNNNLAWIIIRVMIDHVHSVC 77
VR NN W +IR+ + H H++C
Sbjct: 299 VRENNGIWSVIRLDLSHNHNLC 320
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 146 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 256
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 281 SHHGREGCRIAWVDNWDD*NRR 216
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 6 DNSDTIRQ*KLSC-FSSSPYWPWLPQTECTWSIITLIII 119
D D +R+ ++ C F+ P WPWL +++ +++
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVISLLV 307
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 239 YPPKRYDNPLARGGK 283
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>10_06_0078 +
10416950-10417174,10417595-10417679,10417782-10417900,
10418200-10418287,10419400-10419452,10419876-10420015,
10420094-10420166,10420243-10420311,10420632-10420844,
10422304-10422498,10422581-10422658,10423456-10423590
Length = 490
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +2
Query: 83 RVHVVDHNPDYNPGQVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDN 262
++H V + P +PG +++ ++ S+ P G + P FV PN P++Y
Sbjct: 422 KIHAVKYRPGNHPGTRILSQEPKLQAKFSHVPGG--LAVQKSPRFV----PN--PEKYWG 473
Query: 263 PLARGGK 283
P + G+
Sbjct: 474 PKTKAGR 480
>04_03_0904 + 20717005-20718087
Length = 360
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +2
Query: 107 PDYNPGQVVIANPDPFFSQPSNGPSG-NYEPISTGPAFVDFNHPNY--PPKRY 256
P Y P P P+ QP PS +P T P + P Y PP Y
Sbjct: 300 PTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTPTPPYHKPPPSY 352
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 142 VRNNNLAWIIIRVMIDHVHSV 80
+ NL W IIRV +DH H +
Sbjct: 483 ISKRNLIWRIIRVNLDHNHKM 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,225,646
Number of Sequences: 37544
Number of extensions: 197655
Number of successful extensions: 488
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -