Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G02
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)          29   2.2  
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           29   2.2  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 27   5.2  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   6.9  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   6.9  
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   6.9  
SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   27   9.1  

>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
          Length = 245

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +2

Query: 92  VVDHNPDYNPGQVVIANPDPFFSQPS-NGPSGNYEPISTGPAFVDFNHPNYPP 247
           V  H+  Y PGQ  +  P P    P   GP G Y P    P   D   P YPP
Sbjct: 193 VGQHSGPY-PGQPGMWGPPPMGGPPPMGGPPGGYPPPPPPPGAGD---PAYPP 241


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 113 YNPGQVVIANPDPFFSQPSNGPSGNYEPI-STGPAFVDFNH--PNYPPKRYDNP 265
           ++PG   + NP P +  PS  P   Y P  ++ P +  F +  P Y P     P
Sbjct: 81  HSPGITPLGNPQPKY-YPSGNPQPRYYPCGNSQPRYYHFGNPQPRYYPSENSQP 133


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -2

Query: 314 FKIAYLY--ETFTSHHGREGCRI-AWVD 240
           F++A L   E + SH GREGC+   WVD
Sbjct: 75  FRLAQLLNEENWPSHLGREGCQFWIWVD 102


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 131 VIANPDPFFSQP-SNGPSGNYEPISTG 208
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 131 VIANPDPFFSQP-SNGPSGNYEPISTG 208
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = +2

Query: 113 YNPGQVVIANPD--PFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 247
           Y P Q  +  P   P F+ P N P     P +  P    +N   YPP
Sbjct: 153 YPPPQTTMGYPSAQPGFAPPGNYPPPPAPPPAYPPVTQGYNMSQYPP 199


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 131 VIANPDPFFSQP-SNGPSGNYEPISTG 208
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 218 VDFNHPNYPPKRYD 259
           VD NHPNY P+ Y+
Sbjct: 32  VDLNHPNYLPETYN 45


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 95  VDHNPDYNPGQVVIA---NPDPFFSQPS-NGPSGNY-EPISTGPAFVDFNHPNYPPKRYD 259
           ++H P + P    +    +P P +S P+   P+  Y  P STG A  D    +   KRYD
Sbjct: 275 IEHRPHHRPFPPAVHAPYHPPPAYSNPTYQPPASTYPPPTSTGMAAAD--QKDETLKRYD 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,927,323
Number of Sequences: 59808
Number of extensions: 237187
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)