Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G02
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14540.1 68418.m01704 proline-rich family protein contains pr...    31   0.46 
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   0.46 
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    30   0.80 
At1g30780.1 68414.m03763 F-box family protein                          29   1.8  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   4.2  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    27   5.6  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    27   7.4  
At5g45520.1 68418.m05591 hypothetical protein                          26   9.8  
At5g40940.1 68418.m04971 hypothetical protein                          26   9.8  
At2g36895.1 68415.m04525 expressed protein                             26   9.8  
At2g15520.1 68415.m01776 zinc finger protein, putative strong si...    26   9.8  

>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 95  VDHNPDYNPGQVVIANPDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNPL 268
           + H   YNP +     P P  S P N P    ++ P  + P+   +N P  PP  YD P 
Sbjct: 345 LQHPSGYNPEEP----PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPG 400

Query: 269 AR 274
            R
Sbjct: 401 GR 402


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 131 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLARGG 280
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P   GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 12  SDTIRQ*KLSCFSSSPYWPWLPQTECTWSIITLII-IQA 125
           S  I + + SC  SSP+ PW+P    + +I   I+ IQA
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVPAVAASHNISCAILWIQA 134


>At1g30780.1 68414.m03763 F-box family protein 
          Length = 482

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +2

Query: 107 PDYNPGQVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYP 244
           PD+   Q  +A P P    P   P     P+   PAF DF  P  P
Sbjct: 60  PDFPSFQEAVAPPPPPPDLPLLAPPLPDVPLLPPPAFPDFEKPRLP 105


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 164 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 265
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 104 NPDYNPG-QVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 265
           NP+ NP   V + NP    S P N P  +  P S        ++PN PP    NP
Sbjct: 117 NPNSNPNPPVTVPNPPESSSNP-NPPDSSSNPNSNPNPPESSSNPN-PPVTVPNP 169


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 325 FLLVLKSLIFMRHLLPTTGERVVVSLGWIIGMIEIDERRSSAYGFIIS 182
           F  +LK+L FM HL     E+V V   WI  +    +    +Y F IS
Sbjct: 462 FAPILKNLPFMEHLWRHFAEQVKVHHKWIDHLQPSSQSCFLSYRFYIS 509


>At5g45520.1 68418.m05591 hypothetical protein
          Length = 1167

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 317 SFKIAYLYETFTSHHGREGCRIAW 246
           SFK+  L E+ T   G E  +IAW
Sbjct: 524 SFKVESLMESLTGLQGLESLKIAW 547


>At5g40940.1 68418.m04971 hypothetical protein
          Length = 424

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 92  VVDHNPDYNPGQVVIANPDPFFSQPS 169
           VV  +P ++ G VVI   D FF+ P+
Sbjct: 174 VVQDSPVFDDGYVVIYGSDEFFTSPT 199


>At2g36895.1 68415.m04525 expressed protein 
          Length = 232

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 166 WLREERIRV-RNNNLAWIIIRVMIDHVHSVCGSHGQYGEEEKHESFH 29
           W+ EERI +  ++ L  I   ++   + S    HG+    EKH+ FH
Sbjct: 73  WVPEERITLFTSDGLVQIGGNMVPRRIKSSNKKHGRSRSLEKHQKFH 119


>At2g15520.1 68415.m01776 zinc finger protein, putative strong
           similarity to zinc finger protein [Arabidopsis thaliana]
           GI:976277
          Length = 483

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +2

Query: 116 NPGQVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLAR 274
           N G   +A   PF   P+    G +E  STG         N PPK    P  R
Sbjct: 379 NEGGSFLALSQPFTDSPTVYSPGLFETGSTGTFQKKAKQRNRPPKHARKPKPR 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,350,786
Number of Sequences: 28952
Number of extensions: 163194
Number of successful extensions: 433
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)