Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G01
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 32 0.044
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 29 0.54
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 2.2
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 2.2
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 27 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.8
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 25 5.0
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 5.0
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 8.8
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 25 8.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 8.8
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 32.3 bits (70), Expect = 0.044
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 2/128 (1%)
Frame = +3
Query: 30 SRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTP--EEIVVKTVDYKLLVHAKHEE 203
SRQ++ + W +++ L D +L +++ S P E + K L AK
Sbjct: 235 SRQVSAHNFWPKISASLGFPSPDAISLLIQYYNSYLLPYEEAWLAAQQQQKSLQQAKANH 294
Query: 204 KSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQKH*VE 383
++ +S + Y ++ P T PEA+ ++ S G L ++P P +R P V
Sbjct: 295 SANVQSRPKNYPQK---PVQTTPEAVHANGSMHGSLHSKSPSPAFT-ANRFSPAAPTTVS 350
Query: 384 FHTAAIPY 407
A PY
Sbjct: 351 SERNAPPY 358
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 28.7 bits (61), Expect = 0.54
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 78 LIQDEGDGKT-LKLRFDVSQYTPEEIVVKTVDYKL 179
LI D G GK+ L LRF +TP I +D+K+
Sbjct: 14 LIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKI 48
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 180 LVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEA-PLPQL 338
L H HE D +S+YR R L + E + S S + +LTV + P P L
Sbjct: 49 LAHKVHE---DVESIYRRLERLQLCKRNEEEEMLNSDAS-EAMLTVSSVPSPTL 98
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 192 KHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNIPIQK 371
K K+D +S + E ++ ++ + +P ++ SLS D L + + N PI+K
Sbjct: 124 KQLNKTDDESTFIESHQIYIQGETKSPSSVSQSLSGDPSLKPAEVFDRKQSAEINSPIEK 183
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 186 HAKHEEKSDTKSVYREYNREFLLPKGTNP 272
+ H ++S KSV RE NR + L K NP
Sbjct: 357 YMSHHKESIIKSVIREANRVYHLWKDCNP 385
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 3.8
Identities = 28/99 (28%), Positives = 40/99 (40%)
Frame = +1
Query: 112 SFVSTSASTLPRKSSLRL*ITNYWSTPNTRRNLTQNLCTESTTGNSCCQRVRTLRRSSLR 291
S +TSAS+ P S T+ STP + N T ST S T S+
Sbjct: 430 STTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTAT---SASS 486
Query: 292 CPGTVYSPWRLRCHSSPSPTGTSLSRSTELNSTRQLFHT 408
P T + SS T + + ST ++ST ++T
Sbjct: 487 TPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNT 525
Score = 25.8 bits (54), Expect = 3.8
Identities = 29/93 (31%), Positives = 39/93 (41%)
Frame = +1
Query: 112 SFVSTSASTLPRKSSLRL*ITNYWSTPNTRRNLTQNLCTESTTGNSCCQRVRTLRRSSLR 291
S +TSAS+ P S T+ STP T N STT S + SS+
Sbjct: 478 STTATSASSTPLTSVNSTSATSASSTPLTSAN--------STTSTSVSSTAPSYNTSSV- 528
Query: 292 CPGTVYSPWRLRCHSSPSPTGTSLSRSTELNST 390
P + S L +S + T S + T +NST
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASSTPLTSVNST 561
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 63 CPSDLARPTVCY 28
CPS L PTVCY
Sbjct: 286 CPSSLILPTVCY 297
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 5.0
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 3 STTSTQHSDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLR--FDVSQ 134
S+TST+H D QL + +N + + + +KL+ FD++Q
Sbjct: 143 SSTSTEHKDIEQLETEINESGINYKIGDNGSRWRMMKLKRVFDMAQ 188
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 60 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDYK 176
+S+ SP + EG +LK R + TP+ + T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 24.6 bits (51), Expect = 8.8
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -1
Query: 398 SCRVEFNSVLLDRDVPVGDGELWQRSLHGEYTVPGQRRLDRLRVRTLWQQEFP 240
S R E NSVLLD P L + L E + + +L + T + EFP
Sbjct: 264 SSRSEENSVLLDDFTPETVQPLEENELDTELNIENEAKL--FKNLTFYLYEFP 314
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.8
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 178 YWSTPNTRRNLTQNLCTESTTGNSCCQRVRTLRRSSLRCPGTVYSPWRLRCHSSPSPTGT 357
Y STP T L CT ST+ V + ++ C + P+ +S T T
Sbjct: 435 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTT 494
Query: 358 SLSRSTELNST 390
+ + ST + T
Sbjct: 495 NCTTSTSVPYT 505
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 8.8
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -2
Query: 349 SVMASCGSGASTVSTPSLDNEDLIASGFVPFGSRNSLLYSLYTDFVSDFSSCLAWTNNL* 170
S +++ S VS+ L I S S +S++ S T +S SS +++
Sbjct: 495 STLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPS-SSIISSPMTSVLSSSSSIPTSSSSDF 553
Query: 169 STVLTTISSGV 137
S+ +TTISSG+
Sbjct: 554 SSSITTISSGI 564
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 24.6 bits (51), Expect = 8.8
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 301 TVYSPWRLRCHSSPSPTGTSLSRSTELNSTRQLFHTVN--NLF*FTYYKL*ENRLAAIFI 474
++ W L P + LS S +LNST T+N + F L N L +F
Sbjct: 616 SILEKWLLGIGLGEKPNISVLSESYKLNSTSDDSRTINRDRVHSFPTQPLLNNNLPRMFF 675
Query: 475 LES 483
++S
Sbjct: 676 VKS 678
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,076
Number of Sequences: 5004
Number of extensions: 47860
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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