Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G01
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 36 0.014
03_02_0484 + 8805053-8805538 35 0.033
03_02_0483 - 8804021-8804485 35 0.033
07_03_1498 + 26995209-26995752,26995945-26996513 32 0.31
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 29 2.2
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 28 5.1
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 28 5.1
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 6.7
04_01_0484 - 6352556-6352881,6352927-6353692 27 8.8
>03_02_0485 - 8808139-8808618
Length = 159
Score = 36.3 bits (80), Expect = 0.014
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +3
Query: 123 DVSQYTPEEIVVKTVDYKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 275
DV EE+ V+ D +L + + EEKSD V R ++ R F LP+ T PE
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 276 AIKSSLSRDGVLTVEAP 326
IK+S+ +GVLTV P
Sbjct: 128 QIKASM-ENGVLTVTVP 143
>03_02_0484 + 8805053-8805538
Length = 161
Score = 35.1 bits (77), Expect = 0.033
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +3
Query: 123 DVSQYTPEEIVVKTVDYKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 275
DV EE+ V+ D +L + + EEK+D V R ++ R F LP+ T PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 276 AIKSSLSRDGVLTVEAP 326
IK+S+ +GVLTV P
Sbjct: 130 QIKASM-ENGVLTVTVP 145
>03_02_0483 - 8804021-8804485
Length = 154
Score = 35.1 bits (77), Expect = 0.033
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Frame = +3
Query: 123 DVSQYTPEEIVVKTVDYKLLVHA-----KHEEKSDT-KSVYR---EYNREFLLPKGTNPE 275
DV EE+ V+ D +L + + EEK+D V R ++ R F LP+ T PE
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 276 AIKSSLSRDGVLTVEAP 326
IK+S+ +GVLTV P
Sbjct: 123 QIKASM-ENGVLTVTVP 138
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 31.9 bits (69), Expect = 0.31
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +3
Query: 33 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSD 212
++L P HW + P + + G G+ RF + TP E D + VH+ + SD
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPMEPNSFGYD-SIKVHSFSDFDSD 303
Query: 213 TKSVYREYNREFLLPKGTN 269
+ S+ E F + GT+
Sbjct: 304 SDSIEFE-EHSFTVLTGTD 321
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Frame = +3
Query: 96 DGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSV------YRE-----YNR 242
D K +++RFD+ + EE+ V D L++ +H+++ + ++E Y+
Sbjct: 140 DDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDM 199
Query: 243 EFLLPKGTNPEAIKSSLSRDGVLTVEAP 326
LP + +++ L ++GVL V P
Sbjct: 200 RLALPDECDKSKVRAEL-KNGVLLVTVP 226
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 362 RDVPVGDGELWQRSLHGEYTVPGQRRLDRLRVRTLWQQEFPVVLSVHRFCVR 207
RDVP + + S+ G G + ++ +R+ TL FPV +V R CVR
Sbjct: 1376 RDVPPDSAKDYLLSIRGL----GLKSVECVRLLTLHHLAFPVDTNVGRICVR 1423
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 362 RDVPVGDGELWQRSLHGEYTVPGQRRLDRLRVRTLWQQEFPVVLSVHRFCVR 207
RDVP + + S+ G G + ++ +R+ TL FPV +V R CVR
Sbjct: 1405 RDVPPDSAKDYLLSIRGL----GLKSVECVRLLTLHHLAFPVDTNVGRICVR 1452
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 296 GQRRLDRLRVRTLWQQEFPVVLSVHRFCVR 207
G + + +R+ TL Q FPV +V R CVR
Sbjct: 1288 GLKSTECVRLLTLHQMAFPVDTNVARICVR 1317
>04_01_0484 - 6352556-6352881,6352927-6353692
Length = 363
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -2
Query: 292 NEDLIASGFVPFGSRNSLLYSLYTDFVSDFSSCLAWTNNL*STVLTTISSGVYW 131
N++L++ +P G RN+ +YT SD C+ W S + ++W
Sbjct: 164 NQELMSEHLIP-GDRNTCY--VYTLGSSDVPRCIGWPETSASGATVVLHCSLHW 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,065,547
Number of Sequences: 37544
Number of extensions: 332610
Number of successful extensions: 952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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