Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G01
(512 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 57 1e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 51 5e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 49 3e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 49 3e-06
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 49 3e-06
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 49 3e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 47 1e-05
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 42 3e-04
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 37 0.011
SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7) 31 0.74
SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 30 1.3
SB_51290| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89) 29 3.0
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 5.2
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 5.2
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 27 6.9
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 27 6.9
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_19101| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 27 6.9
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.1
SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3) 27 9.1
SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27) 27 9.1
SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3) 27 9.1
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +3
Query: 96 DGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPE 275
D L DVS + PEE+ VK ++L V A+ E + R++NR F+LP+ + +
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPREVDMD 155
Query: 276 AIKSSLSRDGVLTVEA---PLPQLAI 344
+ L +DGVL +EA PL QL I
Sbjct: 156 TLVPRLGKDGVLYIEADKRPLRQLDI 181
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +3
Query: 123 DVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRD 302
DV ++ PEEI K + K+ V +S+ +E+ R + LP+G + +I + ++ D
Sbjct: 12 DVREFKPEEITCKVENGKIKVSGLQRHESEEGFDSKEFRRCYNLPEGVDESSISTRIAED 71
Query: 303 GVLTVEA-PLPQLAITDRNIPIQKH*VEFHTA 395
G+L VEA A T+ P K +F A
Sbjct: 72 GMLHVEALKKSPPATTENKAPATKDDTKFTLA 103
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 51.2 bits (117), Expect = 5e-07
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +3
Query: 105 TLKL-RFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAI 281
TL++ + DV +Y PEEI K + + V +H + + +E+ R F LP+G +PE +
Sbjct: 6 TLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFELKEFRRTFTLPEGIDPENV 65
Query: 282 KSSLSRDGVLTVEA 323
S +S G L +EA
Sbjct: 66 TSRISNHGHLHIEA 79
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/70 (31%), Positives = 42/70 (60%)
Frame = +3
Query: 114 LRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSL 293
+ DV+ + PE I V+ + +LLV+A HE + + +NR+F+LP+ + +++ + L
Sbjct: 100 MAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGHYHAMHFNRQFVLPREVDMDSLTTRL 159
Query: 294 SRDGVLTVEA 323
++G L EA
Sbjct: 160 DKEGKLHFEA 169
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Frame = +3
Query: 84 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKG 263
+ +GD K + DV+ + P+ I V+ + +LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 264 TNPEAIKSSLSRDGVLTVEA 323
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Frame = +3
Query: 84 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKG 263
+ +GD K + DV+ + P+ I V+ + +LLV A HE + + +NR+F+LP+
Sbjct: 326 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 384
Query: 264 TNPEAIKSSLSRDGVLTVEA 323
+ +++ + L ++G L EA
Sbjct: 385 VDMDSLTTRLDKEGKLHFEA 404
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 117 RFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 296
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 297 RDGVLTVEA 323
G L +EA
Sbjct: 71 NHGQLHIEA 79
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 117 RFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 296
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 245 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 304
Query: 297 RDGVLTVEA 323
G L +EA
Sbjct: 305 NHGQLHIEA 313
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Frame = +3
Query: 84 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKG 263
+ +GD K + DV+ + P+ I V+ + +LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 264 TNPEAIKSSLSRDGVLTVEA 323
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 117 RFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 296
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 297 RDGVLTVEA 323
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Frame = +3
Query: 84 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKG 263
+ +GD K + DV+ + P+ I V+ + +LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 264 TNPEAIKSSLSRDGVLTVEA 323
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 117 RFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 296
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 297 RDGVLTVEA 323
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/80 (30%), Positives = 46/80 (57%)
Frame = +3
Query: 84 QDEGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKG 263
+ +GD K + DV+ + P+ I V+ + +LLV A HE + + +NR+F+LP+
Sbjct: 92 ESKGDDK-FSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFVLPRE 150
Query: 264 TNPEAIKSSLSRDGVLTVEA 323
+ +++ + L ++G L EA
Sbjct: 151 VDMDSLTTRLDKEGKLHFEA 170
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 117 RFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 296
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 11 KLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 297 RDGVLTVEA 323
G L +EA
Sbjct: 71 NHGQLHIEA 79
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +3
Query: 90 EGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN 269
EGD K DV Y PEEI +K ++ + KH+ + + E++R + LP G +
Sbjct: 36 EGD-KVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHGYETSEFHRSYNLPDGVD 94
Query: 270 PEAIKSSLSRDGVLTVEA 323
+ S ++ DG+L +EA
Sbjct: 95 VSTVSSRITGDGLLHIEA 112
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 237 NREFLLPKGTNPEAIKSSLSRDGVLTVEA 323
NR F+LPK + +++ S L +DG L +EA
Sbjct: 160 NRHFVLPKDVDMDSLVSRLGKDGKLYIEA 188
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 90 EGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN 269
E + DV + PE I V+ + +LLV A HE + + +NR+F+LP+ +
Sbjct: 93 ESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGHYHAMHFNRQFILPREVD 152
Query: 270 PEAIKSSLSRDGVLTVEA 323
+++ + L ++G L EA
Sbjct: 153 MDSLTTRLDKEGKLHFEA 170
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 117 RFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLS 296
+ DV +Y PEEI K + + V +H + +E+ R F LP+G +K+ +S
Sbjct: 12 KLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 71
Query: 297 RDGVLTVEA 323
G L +EA
Sbjct: 72 NHGQLHIEA 80
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 96 DGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGTN-P 272
D L DVS + PEE+ VK ++L V A+ E + R++NR F+LP+
Sbjct: 24 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPQEVKIT 83
Query: 273 EAIKSSLSR 299
IK ++S+
Sbjct: 84 HQIKHAISK 92
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/100 (21%), Positives = 46/100 (46%)
Frame = +3
Query: 60 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYN 239
++ I + D +KL +V + +++ ++ L++ + +K D R++
Sbjct: 84 ETFTPTFIVTQNDKNGIKLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDDGWCKMRQFC 143
Query: 240 REFLLPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRNI 359
PK T+ ++IK++L +L +EA +L T I
Sbjct: 144 WRRRFPKSTDMKSIKATLKYGDILEIEAQKERLIDTSGKI 183
>SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7)
Length = 416
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/81 (23%), Positives = 41/81 (50%)
Frame = +3
Query: 24 SDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEE 203
++ RQLAE +H++ ++ L Q++G + ++F Y+ + T++++ V+ +
Sbjct: 45 AEPRQLAE-AHFNHVSWQLNQEDGQLEIADVKFMDFSYSKTTLTDATIEHRFEVNRCNMR 103
Query: 204 KSDTKSVYREYNREFLLPKGT 266
S+Y+ Y KGT
Sbjct: 104 NLLPNSIYKVYKSYQKRTKGT 124
>SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 183 VHAKHEEKSDTKSVYREYNREFLLPKGTNPE 275
V+A+ + K D S YR R LP+G NPE
Sbjct: 734 VYAESDTKPDVISDYRRGQRRRTLPRGCNPE 764
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 29.9 bits (64), Expect = 1.3
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = -2
Query: 352 LSVMASCGSGASTVSTPSLDNEDLIASGFVP--FGSRNSLL---YSLYTDFVSDFSSCLA 188
LSV + S S T S D ++S +P F + +SLL SL +DF++ SS
Sbjct: 654 LSVFPTSSSLPSDFLTSSSSPSDFLSSSSLPSDFLTSSSLLSDFLSLPSDFLTSSSSLSD 713
Query: 187 WTNNL*STVLTTISSGVYWLTSKRSFRVLPSPSS 86
+ +L S LT+ S +LTS S + SS
Sbjct: 714 FLTSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSS 747
Score = 28.7 bits (61), Expect = 3.0
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = -2
Query: 352 LSVMASCGSGASTVSTPSLDNEDLI--ASGFVPFGSRNSLLYSLYTDFVSDFSSCLAWTN 179
LS + S S T S D + +S F + +S L T S S L ++
Sbjct: 384 LSDFLTSSSSLSDFLTSSSSLSDFLTSSSSLSDFLTSSSSLSDFLTSS-SSLSDFLTSSS 442
Query: 178 NL*STVLTTISSGVYWLTSKRSFRVLPSPSS 86
+L S LT+ SS +LTS S V P+PSS
Sbjct: 443 SL-SDFLTSCSSLSDFLTSSSSLSVFPTPSS 472
>SB_51290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 244 NSCCQRVRTLRRSSLRCPGTVYSPWRLRCHSSPSPTGTSLSRST 375
NS C R R+ RS P T S RC S P G ++ + T
Sbjct: 284 NSYCYRYRSAARSQ-NSPDTTASNLGFRCASDSPPPGVTIIKKT 326
>SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 214 QNLCTESTTGNSCCQRVRTLRRSSLRCPGTVYSPWRLRCHSSPSPTGTSLSRSTE 378
Q L T +T + C QR +T ++ R + P R+ HSSPSP S ++ +
Sbjct: 625 QVLSTVQSTTDICTQRKKTRTQTRDR---KAWKPERMFVHSSPSPAPHSKTQEAQ 676
>SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89)
Length = 251
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +1
Query: 172 TNYWSTPNTRRNLTQNLCTESTTGNSCCQRVRTLRRSSLRCPGTVYSPWRLRCHSSPSPT 351
T + S PNT R+ N T +T NS T R +SL SP H+SP+P
Sbjct: 194 TRHNSLPNTTRH---NSLTNTTRHNSL---PNTTRHNSLPNITRHNSPSNTTRHNSPTPP 247
Query: 352 GTS 360
GT+
Sbjct: 248 GTT 250
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 27 DSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEE 149
DS + E + WD+ + D+GD KT++ D S Y E
Sbjct: 1566 DSHEGKEKNEWDNYDGD--NDDGDSKTIEANKDKSVYHHSE 1604
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 5.2
Identities = 24/90 (26%), Positives = 38/90 (42%)
Frame = +1
Query: 121 STSASTLPRKSSLRL*ITNYWSTPNTRRNLTQNLCTESTTGNSCCQRVRTLRRSSLRCPG 300
S +++ PR S STP T T + + STT NS + T S+ R
Sbjct: 80 SAPSTSTPRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPST---STPRTGS 136
Query: 301 TVYSPWRLRCHSSPSPTGTSLSRSTELNST 390
T+ + +P+ TS+SR+ +T
Sbjct: 137 TITLRTSTTSVMTTTPSTTSISRAGSTTTT 166
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 245 IPAAKGYEP*GDQVFVVQGRCTHRGGSAATARHHRQEHP 361
+PA P D+ + Q T+ GGS + H R+ P
Sbjct: 774 MPAQTSSSPGNDRCGIPQNESTYHGGSTQSHAHKRESSP 812
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 305 CTHRGGSAATARHHRQEHPYPEALS*IPHGSYSILLIIYFNLRII 439
C HR T R + +P + PH SY +L ++L I+
Sbjct: 509 CAHRSSLPLTRRFSYSQIVFPSHIVFTPHRSYLLLTDRLYHLHIV 553
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 277 RSSLRCPGTVYSPWRLRCHSSPSPTGTSLSRSTELNST 390
R +RC G SP SSP P +S S S+ +S+
Sbjct: 560 RGDIRCLGRFVSPPSSSSSSSPPPASSSSSSSSSSSSS 597
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 280 SSLRCPGTVYSPWRLRCHSSPSPTGTSLSRSTELNS 387
+SL+CPGT S R + SP G +S T + S
Sbjct: 1440 TSLQCPGTTLSGHCHRSKNKGSPVGMVMSGQTSIIS 1475
>SB_19101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 190 PNTRRNLTQNLCTESTTGNSCCQRVRTLRR 279
PNTR++ T L TE + C R TL R
Sbjct: 16 PNTRQHYTIELGTERSVAQGACNRQITLDR 45
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Frame = +1
Query: 205 NLTQNLCTE-STTGNSCCQ---------RVRTLRRSSLRCPGTVYSPWRLRCHSSPSP 348
N+ +NLC + + G +CC + TLR+ + RCP + + C S+ SP
Sbjct: 65 NILKNLCPKIAQGGKTCCDLRQLEALDSNLNTLRQFTSRCPACWQNMLDMYCESTCSP 122
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Frame = +1
Query: 205 NLTQNLCTE-STTGNSCCQ---------RVRTLRRSSLRCPGTVYSPWRLRCHSSPSP 348
N+ +NLC + + G +CC + TLR+ + RCP + + C S+ SP
Sbjct: 285 NILKNLCPKIAQGGKTCCDLRQLEALDSNLNTLRQFTSRCPACWQNMLDMYCESTCSP 342
>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1219
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 98 VTFILNQ-R*VEAVPVTWLGQLSAITMLCGC 9
VT I+ Q R V +PVTW G +S L GC
Sbjct: 910 VTRIVTQGRYVRVLPVTWHGHISMRMELFGC 940
>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
Length = 306
Score = 27.1 bits (57), Expect = 9.1
Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Frame = +3
Query: 21 HSDSRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEI-VVKTVDYKLLVHAKH 197
H D +++ P HWD+++S L + D + + + P + +D++L K
Sbjct: 96 HPDKVEVSSPYHWDNIDSSL-ANWTDLFLAAVNEHIPKSKPRNVNDYPWIDHELRSLLKK 154
Query: 198 EEKSDTKSVYREYNR--EFLLPKGTNPEAIKS-SLSRDGVL---TVEAPLPQLAITDRNI 359
++ TK++ NR + + E + + +R+ VL +++ +P++ RN+
Sbjct: 155 KDAQHTKNIANLLNRYIHSIFSSSASEEFVSAIPTNREPVLGLGSIQLTVPEVLDVLRNL 214
Query: 360 PIQK 371
K
Sbjct: 215 DSHK 218
>SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)
Length = 396
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 93 GDGKTLKLRFDVSQYTPEEIVVKTVDYKLLVHAKHEEKSDTKSVYREYNREFLLPKGT 266
G+GKT ++ + QY P E + + YK ++EE K+ ++F+ KG+
Sbjct: 337 GEGKTAEMDYK-KQYRPIETYEQRLLYKQDFQVEYEEYLHLKNKIDNVTKKFMELKGS 393
>SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3)
Length = 129
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 335 LWQRSLHGEYTVPGQRRLDRLRVRTL 258
LWQR GE++ +R +D ++R L
Sbjct: 27 LWQRKTPGEHSKTNKRNMDNRKMRVL 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,058
Number of Sequences: 59808
Number of extensions: 395766
Number of successful extensions: 1154
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -