Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G01
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    34   0.049
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo...    32   0.26 
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At2g33170.1 68415.m04064 leucine-rich repeat transmembrane prote...    28   4.2  
At5g07170.1 68418.m00817 hypothetical protein                          27   7.4  
At5g02760.1 68418.m00218 protein phosphatase 2C family protein /...    27   7.4  
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s...    27   7.4  
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei...    27   9.8  

>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 34.3 bits (75), Expect = 0.049
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
 Frame = +3

Query: 123 DVSQYTPEEIVVKTVDYKLLV-----HAKHEEKSDT-KSVYR---EYNREFLLPKGTNPE 275
           D+     EE+ V+  D  +L      H + EEK DT   V R   +++R+F LP+    +
Sbjct: 64  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123

Query: 276 AIKSSLSRDGVLTVEAP 326
            +K+S+  +GVLTV  P
Sbjct: 124 QVKASM-ENGVLTVTVP 139


>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
           chloroplast precursor (HSP25.3-P) identical to small
           heat shock protein, chloroplast precursor SP:P31170 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 227

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +3

Query: 108 LKLRFDVSQYTPEEIVVKTVDYKLLV--HAKHEEKSDTKS--VYREYNREFLLPKGTNPE 275
           +K+RFD+   + E++ +   D  L++    K E+  D+ S      Y     LP     +
Sbjct: 138 IKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKD 197

Query: 276 AIKSSLSRDGVLTVEAP 326
            IK+ L ++GVL +  P
Sbjct: 198 KIKAEL-KNGVLFITIP 213


>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 642

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 241 GNSCCQRVRTLR--RSSLRCPGTVYSPWRLRCHSSPSPT 351
           G+  C R ++      SL C GT  +PW + C SSP  T
Sbjct: 11  GDGVCMRCKSNPPPEESLTC-GTCVTPWHVSCLSSPPKT 48


>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 645

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 241 GNSCCQRVRTLR--RSSLRCPGTVYSPWRLRCHSSPSPT 351
           G+  C R ++      SL C GT  +PW + C SSP  T
Sbjct: 11  GDGVCMRCKSNPPPEESLTC-GTCVTPWHVSCLSSPPKT 48


>At2g33170.1 68415.m04064 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           [Pinus sylvestris] gi|12054894|emb|CAC20842; contains
           leucine rich repeat (LRR) domains, Pfam:PF00560;
           contains protein kinase domain, Pfam:PF00069
          Length = 1124

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 388 WNS---TQCFWIGMFLSVMASCGSGASTVSTPSLDNEDLIASGFV 263
           WN    T C WIG+  S   S  S  S V T SLD   +  SG V
Sbjct: 58  WNGIDETPCNWIGVNCSSQGSSSSSNSLVVT-SLDLSSMNLSGIV 101


>At5g07170.1 68418.m00817 hypothetical protein
          Length = 542

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 183 VHAKHEEK--SDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLT 314
           +H ++EEK     K V  +YN    +PK T+    K+ L ++  LT
Sbjct: 230 IHLRYEEKHLEIPKPVSDQYNAPKDVPKATHKSKTKTYLRKNSTLT 275


>At5g02760.1 68418.m00218 protein phosphatase 2C family protein /
           PP2C family protein similar to Ser/Thr protein
           phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
           thaliana]; similar to protein phosphatase 2C
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 370

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 231 EYNREFLLPKGTNPEAI-KSSLSRDGVLTVEAPLPQ 335
           E+NRE LLPK   PE   K  LS D  +T+    PQ
Sbjct: 232 EFNREPLLPKFRLPEHFTKPILSADPSVTITRLSPQ 267


>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
           similar to chitinase GI:17799 from [Brassica napus];
           contains Pfam profiles PF00182: Chitinase class I,
           PF00187: Chitin recognition protein
          Length = 281

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 211 TQNLCTESTTGNSCCQRVRTLRRSSLRC-PGTVYSPWRLRCHSSPSPTGTSLSRSTELNS 387
           +QN  T    GN CC R      +   C  G    P    C+S P PT T  S S  LN+
Sbjct: 28  SQNCGTNGCKGNMCCSRWGYCGTTKAYCGTGCQSGP----CNSKPKPTPTP-SGSGGLNA 82


>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
           contains Pfam profiles: PF02538 hydantoinase
           B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
           PF05378 hydantoinase/oxoprolinase N-terminal region
          Length = 1266

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 122 ETKLQGFAVTFILNQR*VEAVPVT 51
           + +++G  VT IL  R VEA PVT
Sbjct: 633 DVRVRGIGVTSILKPRAVEAAPVT 656


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,200
Number of Sequences: 28952
Number of extensions: 257052
Number of successful extensions: 749
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)