Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F23
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.071
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   1.5  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   4.7  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    26   4.7  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   4.7  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   8.1  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   8.1  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.1  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 31.9 bits (69), Expect = 0.071
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
 Frame = +2

Query: 158 TYSRYLLR---TVATEKTTSLSWKMSLTS*KIAPDLHLDRLPDYYRHVISSPA*PSECST 328
           TYS+Y      +  T  T+SLS+  +++S  IAP +   R    Y  + SS + PS  S+
Sbjct: 101 TYSQYFTLQACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSY-FITSSSSTPSSSSS 159

Query: 329 ARSILGTTPGRFILPNRTSATNC*DTHRCSRTLRSLSSPKRSAS 460
           + S   ++P      + +S+ +   +   S++  S SS  +S+S
Sbjct: 160 SSS---SSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSS 200


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 128  TRHMLARNTITYSRYLLRTVAT 193
            T  ++ +N +TYS YLL+++ T
Sbjct: 1836 TSKLIVQNAVTYSNYLLKSIKT 1857


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 272  PDYYRHVISSPA*PSE---CSTARSILGTTPGRFILPNRTSA 388
            PDY  H+I S   PSE     T  +++ T P    LP + ++
Sbjct: 1460 PDYNIHIIDSDNIPSEELSSVTLSAVVSTIPADIELPEKVAS 1501


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 392 SWQTSGSGV*SGLEWCLIYCVLWNTRKARP 303
           SW+ SG  V +    C  YC +WN  KA P
Sbjct: 339 SWRHSGRIVSA----CQEYCYVWNFNKANP 364


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +1

Query: 64   VDYTKEEIYTWGEVFRKLTHLYPTHA-CKEHNHVFPLLIENCGYREDNIPQLEDVSNFLK 240
            VD     ++   E  +K+   +  H  CK    + P  + N        PQLE  +   K
Sbjct: 897  VDLQCRYLHELSEFIKKIPKEFIFHTICKLSKGLIPCFLMNA------FPQLEKSTTLQK 950

Query: 241  DCTGFTLRPVAGLLSS 288
             CT F +  +  LL+S
Sbjct: 951  SCTNFCILILQLLLNS 966


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 395 SSWQTSGSGV*SGLEWCLIYCVLW 324
           ++W  +G+ V SGL W   +  +W
Sbjct: 71  NTWMIAGTAVESGLSWWEAWITVW 94


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 316 RVFH--STQYIRHHSRPLYTPEPDVCHELLGHAPLFADPAFAQFSQEIGLA 462
           R+ H  S  Y++     +Y P+ ++ H LLG    +    +AQ    I LA
Sbjct: 178 RIVHVASIAYLQAPYSGIYFPDLNLPHVLLGTFARYGQSKYAQILYSIALA 228


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 160 VFPLLIENCGYREDNIPQLEDVSNFLKDCTGFTLRPVAGLLSS 288
           V  L+ E  G+    IP    V + L +C  F LRP+  +LSS
Sbjct: 205 VLELVAEGRGFA---IPWYTSVCSKLPNCDTFLLRPLREVLSS 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,108
Number of Sequences: 5004
Number of extensions: 53032
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)