Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F23
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0304 - 33001393-33001527,33001627-33001764,33001861-330019...    31   0.89 
01_05_0507 - 22800124-22800163,22800411-22800554,22801291-228018...    29   2.1  
08_01_0106 - 762287-763393,763752-764414                               29   2.7  
07_01_0703 - 5295561-5297523,5299344-5299462                           28   6.3  
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496...    27   8.3  

>03_06_0304 -
           33001393-33001527,33001627-33001764,33001861-33001938,
           33002048-33002124,33003370-33003871
          Length = 309

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 296 SSPA*PSECSTARSILGTTPGRFILPNRTSATNC*DTHR---CSRTLRSLSSPKRSASPL 466
           SSPA  S  S+A + LG  PGR  +   T+A       R      T R LSS  R+ S L
Sbjct: 11  SSPAASSSSSSAPAKLGAAPGRVAVRKLTAAATSLRLDRAPAAPATERGLSSVSRTMSRL 70

Query: 467 WE 472
            E
Sbjct: 71  ME 72


>01_05_0507 -
           22800124-22800163,22800411-22800554,22801291-22801850,
           22803207-22803264,22803885-22804124,22804191-22804315
          Length = 388

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 340 IRHHSRPLYTPEPDVCHELLGH 405
           +RHH   L+ P PD  H L+GH
Sbjct: 302 VRHHRWHLHFPSPDYRHILIGH 323


>08_01_0106 - 762287-763393,763752-764414
          Length = 589

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 190 YREDNIPQLEDVSNFLKDCTGFTLRPVAGLLSSR 291
           YRED+   +    N L D  GF  +P  GL+++R
Sbjct: 271 YREDDRVDVATPGNGLNDYLGFRAQPTLGLITAR 304


>07_01_0703 - 5295561-5297523,5299344-5299462
          Length = 693

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 492 LNVIIGCSQRGEADLLGELSERRVREQRCVS*QFVADVRFGS 367
           LNV++ CS   EA +L EL++   R  + +   F+ D+ F +
Sbjct: 474 LNVVLNCSNCSEAKVLTELAKSMGRCSQNLCKLFLEDMHFNA 515


>06_02_0200 -
           12946139-12946282,12947636-12947842,12949506-12949629,
           12950167-12950369,12950922-12951620,12951723-12951784,
           12952395-12952404,12954905-12957631
          Length = 1391

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = +1

Query: 136 HACKEHNHVFPLLIENCGYREDNIPQLEDVSNFLKDCTGFTLRPVAG-LLSSRDFLAGLA 312
           H+C +   V  +     G RE  I      S F   C G +   V G +L      + L 
Sbjct: 638 HSCNDSGSVLYIWDLKTGARERIITGTSSQSTFEHFCRGISKNAVTGSILGGTTSASSLL 697

Query: 313 FRVFHSTQYIRHHS 354
             +F  T  ++ H+
Sbjct: 698 VPIFKDTSLLQSHA 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,637,046
Number of Sequences: 37544
Number of extensions: 386690
Number of successful extensions: 932
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)