Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F23
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)             171   3e-43
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             31   0.69 
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    31   0.91 
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)                      28   6.4  

>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score =  171 bits (417), Expect = 3e-43
 Identities = 78/100 (78%), Positives = 88/100 (88%), Gaps = 7/100 (7%)
 Frame = +1

Query: 241 DCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHHSRPLYTPEPDVC-------HELL 399
           +CTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRH ++P+YTPEP +C       HEL+
Sbjct: 223 ECTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPTKPMYTPEPTICIVSSDVVHELI 282

Query: 400 GHAPLFADPAFAQFSQEIGLASLGAPDDYIEKLATCFWFT 519
           GH PLFADP FAQFSQEIGLASLGAPD+++EKLAT +WFT
Sbjct: 283 GHVPLFADPDFAQFSQEIGLASLGAPDEWVEKLATLYWFT 322



 Score = 35.5 bits (78), Expect = 0.032
 Identities = 15/26 (57%), Positives = 21/26 (80%), Gaps = 2/26 (7%)
 Frame = +3

Query: 513 VYW--LKFGMCSAEGKLKAYGAWLLS 584
           +YW  ++FG+C  EG++KAYGA LLS
Sbjct: 318 LYWFTVEFGLCRQEGEVKAYGAGLLS 343


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 121 GSVS*IPLPTYIFPPWCNQRAGAAARACS 35
           GS + IP PT  F PW NQ A +  ++C+
Sbjct: 232 GSATPIPCPTGTFNPWTNQGALSDCKSCT 260


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 16  FADIAYNYKHGQPLPHVDYTKEEIY-TWGEVFRKLTHLYPTHA 141
           +A +   Y HG    HV  T   +Y T+  V+R   H+Y T+A
Sbjct: 782 YAHLYRTYAHGTEHMHVYRTYAHLYRTYAHVYRTYAHVYRTYA 824



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 16  FADIAYNYKHG-QPLPHVDYTKEEIY-TWGEVFRKLTHLYPTHA-CKEHNHVF 165
           +A +   Y H  +   HV      +Y T+  V+R   HLY T+A   EH HV+
Sbjct: 747 YARVYRTYAHVYRTYAHVYRPYAHVYRTYARVYRTYAHLYRTYAHGTEHMHVY 799



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 49  QPLPHVDYTKEEIY-TWGEVFRKLTHLYPT--HACKEHNHVF 165
           +P  HV  T   +Y T+  V+R   H+Y T  H  + + HV+
Sbjct: 731 RPYAHVYRTYAHVYRTYARVYRTYAHVYRTYAHVYRPYAHVY 772


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 112 KLTHLYPTHACKEHNHVFPLLIENCGYREDNIPQLEDVSNFLKDCTGFTLRPVAG 276
           K+TH+   +  +EH   FP  IE    + D++PQ + + NF +  T F    + G
Sbjct: 702 KITHI--VNITQEHKSAFPESIEYLTLQLDDVPQTQ-LINFFEKTTKFLSDAIDG 753


>SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 224 SLTS*K-IAPDLHLDRLPDYYRHVIS 298
           SLTS + I PD H + +PD+Y+  IS
Sbjct: 80  SLTSIRNIVPDFHQEYVPDFYQEYIS 105


>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
          Length = 551

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 69  LHQGGNIYVGRGIQETDPPVPDTCLQGTQSR 161
           LH GG++++G  + +   P+  T  +G Q R
Sbjct: 29  LHDGGDVWLGHALNQNLEPIKITINEGHQGR 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,946,829
Number of Sequences: 59808
Number of extensions: 423288
Number of successful extensions: 1121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)