Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F23
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52350.1 68418.m06496 exocyst subunit EXO70 family protein st...    31   0.43 
At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1...    30   0.99 
At1g74770.1 68414.m08663 expressed protein                             29   3.0  
At1g24420.1 68414.m03077 transferase family protein similar to d...    28   4.0  
At1g18920.1 68414.m02355 hypothetical protein contains Pfam prof...    28   4.0  
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1...    28   5.3  
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1...    28   5.3  
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1...    28   5.3  
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm...    28   5.3  
At1g50910.1 68414.m05724 expressed protein                             28   5.3  
At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF020...    27   7.0  
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    27   9.2  
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       27   9.2  

>At5g52350.1 68418.m06496 exocyst subunit EXO70 family protein
           strong similarity to unknown protein (emb|CAB83315.1);
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 547

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 316 RVFHSTQYIRHHSRPLYTPEPDVCHELLGHAPLFADPAFAQFS 444
           ++ +   YIR   + L+  E ++CH++L     F D +FA+ +
Sbjct: 220 KIMNWIHYIRISVKLLFAAEKEICHQILDGVEPFRDQSFAEIT 262


>At5g22780.1 68418.m02663 adaptin family protein similar to
           SP|P18484 adaptor-related protein complex 2 alpha 2
           subunit (Alpha-adaptin C) (Clathrin assembly protein
           complex 2 alpha-C large chain) {Rattus norvegicus};
           contains Pfam profiles PF01602 Adaptin N terminal
           region, PF02883 Adaptin C-terminal domain
          Length = 1013

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 367 TPEPDVCHELLGHAPLFADPAFAQFSQEIGLASLGAPDD 483
           TP PD+  +LLG   + A P    + Q   + + G PD+
Sbjct: 676 TPSPDLLSDLLGPLAIEAPPGAVSYEQHGPVGAEGVPDE 714


>At1g74770.1 68414.m08663 expressed protein
          Length = 985

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 HACKEHNHVFPLLIENCGYRE 198
           H  KE   VFPLLIE   +RE
Sbjct: 158 HMLKEERQVFPLLIEKFSFRE 178


>At1g24420.1 68414.m03077 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034],
           acetyl-CoA:benzylalcohol acetyltranferase [Clarkia
           concinna][GI:6166330][PMID:10588064]
          Length = 436

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 503 RVFGLLVEIWNVFGRGQAEGLW 568
           R+F LL EI  V+GRG    LW
Sbjct: 337 RIFELLEEIGKVYGRGNEMDLW 358


>At1g18920.1 68414.m02355 hypothetical protein contains Pfam profile
           PF03794: Domain of Unknown function
          Length = 980

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 HACKEHNHVFPLLIENCGYRE 198
           H  KE   VFPL+IEN  + E
Sbjct: 166 HMLKEERQVFPLMIENFSFEE 186


>At5g22770.3 68418.m02661 adaptin family protein similar to
           SP|P18484 adaptor-related protein complex 2 alpha 2
           subunit (Alpha-adaptin C) (Clathrin assembly protein
           complex 2 alpha-C large chain) {Rattus norvegicus};
           contains Pfam profiles PF01602 Adaptin N terminal
           region, PF02883 Adaptin C-terminal domain
          Length = 1012

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 367 TPEPDVCHELLGHAPLFADPAFAQFSQEIGLASLGAPDD 483
           TP PD+  +LLG   + A P      Q   + + G PD+
Sbjct: 676 TPSPDLLSDLLGPLAIEAPPGAVSNEQHGPVGAEGVPDE 714


>At5g22770.2 68418.m02660 adaptin family protein similar to
           SP|P18484 adaptor-related protein complex 2 alpha 2
           subunit (Alpha-adaptin C) (Clathrin assembly protein
           complex 2 alpha-C large chain) {Rattus norvegicus};
           contains Pfam profiles PF01602 Adaptin N terminal
           region, PF02883 Adaptin C-terminal domain
          Length = 1012

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 367 TPEPDVCHELLGHAPLFADPAFAQFSQEIGLASLGAPDD 483
           TP PD+  +LLG   + A P      Q   + + G PD+
Sbjct: 676 TPSPDLLSDLLGPLAIEAPPGAVSNEQHGPVGAEGVPDE 714


>At5g22770.1 68418.m02659 adaptin family protein similar to
           SP|P18484 adaptor-related protein complex 2 alpha 2
           subunit (Alpha-adaptin C) (Clathrin assembly protein
           complex 2 alpha-C large chain) {Rattus norvegicus};
           contains Pfam profiles PF01602 Adaptin N terminal
           region, PF02883 Adaptin C-terminal domain
          Length = 1012

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 367 TPEPDVCHELLGHAPLFADPAFAQFSQEIGLASLGAPDD 483
           TP PD+  +LLG   + A P      Q   + + G PD+
Sbjct: 676 TPSPDLLSDLLGPLAIEAPPGAVSNEQHGPVGAEGVPDE 714


>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
           to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
           finger) (2 copies)
          Length = 1254

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 136 HACKEHNHVFPLLIENCGYRE 198
           H  KE   VFPLLIE   Y E
Sbjct: 173 HLAKEQKQVFPLLIEKFKYEE 193


>At1g50910.1 68414.m05724 expressed protein
          Length = 552

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 163 FPLLIENCGYREDNIPQ-LEDVSNFLKDCTGFTLRPVAGLLSSR 291
           F LLIENC   ED  P  L D      D    +L P+A   SS+
Sbjct: 417 FMLLIENCPIAEDITPSPLPDADENGYDTATESLTPIAEAASSK 460


>At1g65080.1 68414.m07378 OXA1 family protein contains Pfam PF02096:
           60Kd inner membrane protein; similar to AtOXA1
           (GI:6624207) [Arabidopsis thaliana]
          Length = 525

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 283 SSRDFLAGLAFRVFHSTQYIRHHSRPLYTPEPD---VCHELLGHAPLFADPAFAQFSQEI 453
           SSR  L+ L F           HS PL++P P     C   L H  L + P F   SQEI
Sbjct: 12  SSRHRLSSLFFSHHLKPSSFISHSPPLFSPSPSPSPTCFSPL-HRLLSSGPEFPIGSQEI 70


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor, Homo
            sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1793

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 201  VFSVATVLNK*REYVIVFLASMCRVQVGQFPEYLSPRIYFLLGVI 67
            VFS +  LN   E +I F+ ++C+V + +     +PR++ L  ++
Sbjct: 1074 VFSQSQKLNS--EAIIDFVKALCKVSMDELRSPSNPRVFSLTKIV 1116


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 127 YPTHACKEHN--HVFPLLIENCGYREDNIPQLEDVSNFLKDCTGFTL---RPVAG 276
           YPT A   H   + +  ++      E + PQ E+V  FLKD T F +    PV+G
Sbjct: 234 YPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVAAPVSG 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,693
Number of Sequences: 28952
Number of extensions: 291481
Number of successful extensions: 675
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)