Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F22
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   1.2  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   2.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   3.7  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   6.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   8.5  

>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYT--ITTAVSSVKAGHSIDVVISGKTP 249
           P     S  F+ IP    +V+++   Y+  + T +S +KA   +  ++ GK P
Sbjct: 257 PANYITSTAFESIPESGHNVRSLEITYSGSLLTNISLIKADDLVGALVDGKLP 309


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 394 KELDRQTVSYPWTAPKDLEGDVVFNVTIV 480
           K L+ +TV+   T PKD++G   FN+ ++
Sbjct: 134 KHLNERTVTESITPPKDVDGFGAFNIGLL 162


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -1

Query: 267  AGHFVFGCFAADNHVNGMTSFYRAD---SCSDGVRRWYCLNISSV 142
            AG   FG    D  +   TSF   D   +CSD  + W C +  S+
Sbjct: 1104 AGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSI 1148


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +1

Query: 184 TTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKI-VGTWTVSPDDTFSQXLNCGE 360
           TT   + ++G S DVV+     +D     L +A +  K  V   ++    +  + L  GE
Sbjct: 423 TTDPINDESGASSDVVVIDDEEDDIENRPLNQALKASKAAVSNASLLQSSSLDRPL-LGE 481

Query: 361 PNNAVTHKMHAKELDRQTVSYPWT 432
             +   HK+    LD   +SYPW+
Sbjct: 482 MKDK-NHKVLMPSLDDPMLSYPWS 504


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 163 VPAPYTITTAVSSVKAGHSIDVVISG 240
           VP+P+  +TA SS +  +S+D+  SG
Sbjct: 184 VPSPFGASTASSSSRRVYSVDLRDSG 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,081
Number of Sequences: 5004
Number of extensions: 44944
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)