Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F22
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.2  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_2744| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)                  27   6.6  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_17991| Best HMM Match : GRP (HMM E-Value=7.5)                       27   8.8  
SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)            27   8.8  

>SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 418 KQSVCLILWHASCGS--RRYLVHHS*GXARRYHRGLRSK 308
           +  + L+LW  + GS  RR+++HH  G  +  H+ L  K
Sbjct: 37  RPKIALLLWVLNRGSKDRRFVIHHGQGNHKSNHKNLHKK 75


>SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 364 NNAVTHKMHAKELDRQTVSYPWT-APKDLEGDVVFNVTIVKS 486
           ++AVT K+  K  DR+ +S PW   P D+   V  +   V S
Sbjct: 100 DSAVTVKVRVKVRDREIISIPWVPEPPDISRPVTLSQNAVTS 141


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 187 TAVSSVKAGHSIDVVISGKTPEDK 258
           T+V  +K G  I+VVIS K PED+
Sbjct: 72  TSVEQMKEGTVIEVVISAKVPEDE 95


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 126  RHDPRARC*CSDSTSALHHHYSCQLGKSWSFH*RGYQRQNTRRQNGRH 269
            RHD    C  S ++   +    C   + W     GY+RQ TR    +H
Sbjct: 1789 RHDKGVECLPSCTSDGSYEELQCIRDECWCVDKYGYERQATRMIGRKH 1836


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 316 RSKCRRSC-HPDELPGGCRPFC 254
           R++C R C +P+ +PG C P C
Sbjct: 250 RTECSRDCPNPEPIPGQCCPIC 271


>SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 372 GVIWFTTVE-GLREGIIGAYGPSADDLVTLTSFQEDA 265
           GV WF  ++  +R  I GA GP+ +     T   EDA
Sbjct: 285 GVSWFALLKVNIRSSIAGAGGPAMEAQTEFTKLLEDA 321


>SB_2744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 8/121 (6%)
 Frame = +1

Query: 142 HAADVQTVPAP----YTITTAVSSVKAG-HSIDVVISGKTPEDKMAGILLEARQGDKIVG 306
           +A DV TVP P    Y +   V ++  G +++DV +           + +      K   
Sbjct: 37  YAHDV-TVPTPDKGKYALNVTVPTLDKGKYALDVTVPTLDKGKYALNVTVPTLDKGKYAL 95

Query: 307 TWTVSPDDTFSQXLNCGEPN---NAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFNVTI 477
             TV   D     LN   P        H M    LD+   ++  T PK  +G    NVT 
Sbjct: 96  NVTVPTLDKGKYALNVTVPTLDKGMYAHDMTVPTLDKGKYAHDVTVPKLDKGKYALNVTT 155

Query: 478 V 480
           V
Sbjct: 156 V 156


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 143  TLLMFRQYQRLTPSLQLSAR*KLVIPLTWLSAAKHPKTKWPASSW 277
            +LL  R  Q   P    S     V  + WL+ +  P++ WP S W
Sbjct: 1582 SLLEVRNSQNCDPIFVASVFVATVARVAWLTLSLWPRSLWPWSFW 1626


>SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)
          Length = 346

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 97  PTGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPE 252
           P G  P  C  + PG+  DV  +PA Y     +     G  + ++  G  P+
Sbjct: 274 PPGYGPDVCI-IPPGYGPDVYIIPADYGPDVCIIPPGYGPDVCIIPPGYGPD 324


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 360  FTTVEGLREGII-GAYGPSADDLVT-LTSFQEDAGHFVFGCFAADNHVNGMTSF 205
            F T+  +++ I   A+   +  L+T  T+F   A H+ F CF AD   NG   F
Sbjct: 2271 FGTIANVQKKISEAAFTDDSPTLITNATTFTIRASHYEFSCFVADIG-NGTVGF 2323


>SB_17991| Best HMM Match : GRP (HMM E-Value=7.5)
          Length = 186

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 292 DKIVGTWTVSPDDTFSQXLNCGEPNNAVTHKMHAKELDRQTVSYP 426
           D +  T + S D T+    N G P + VT     + LDR T +YP
Sbjct: 85  DLVTNTTSASSDVTYK---NHGSPYDEVTATSTYQSLDRTTRTYP 126


>SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)
          Length = 458

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +1

Query: 250 EDKMAGILLEARQGDKIVGTWTVSPDDTFSQXLNC-GEPNNAVTHKMHAKELDRQTVSYP 426
           +DK+   L E +QGD+ +G  T +  D   Q  +   E  N   ++M   + D Q     
Sbjct: 257 KDKVISTLREGKQGDESMGAVTSAEFDEVCQERDALKEELNQTRYRMEQVKTDLQDAEQH 316

Query: 427 WTAPKDLEGDVV 462
             A  D+  + V
Sbjct: 317 QQAEADIAQEKV 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,398,011
Number of Sequences: 59808
Number of extensions: 399717
Number of successful extensions: 1222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)