Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F21
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   2.4  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   3.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   4.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   9.6  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 313 PSVPQTGAYMKVQTQGSASSHVPSFT 236
           PS+ Q   Y  +Q  GS+++ +PSF+
Sbjct: 173 PSLNQMQDYQNLQQNGSSNTTIPSFS 198


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 76 NIPSIFILCYCLWHK 32
          ++PSI+ILC+C  H+
Sbjct: 34 SLPSIYILCHCSKHQ 48


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 221 QRFENRERGYV*GSRSLRLY 280
           Q  +  +RGYV G R+LRLY
Sbjct: 901 QHKDTYDRGYVRGLRTLRLY 920


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 173  DLPQPVPLVLREGQDAQRFENRERGYV*GSRS 268
            D+P  +PL L + Q+ +  EN E+G +  ++S
Sbjct: 1048 DMPFTMPLSLNDKQNNEGDENCEKGQLFDAKS 1079


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,144
Number of Sequences: 5004
Number of extensions: 29893
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)