Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F21
(388 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 57 5e-09
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 50 6e-07
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 50 6e-07
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 42 1e-04
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 32 0.16
Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical pr... 29 1.1
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 28 2.0
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 2.0
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 2.0
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep... 28 2.0
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue... 28 2.0
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 28 2.6
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 28 2.6
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 28 2.6
U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of s... 25 3.6
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical pr... 27 6.1
U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative transc... 27 6.1
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 27 6.1
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 56.8 bits (131), Expect = 5e-09
Identities = 27/68 (39%), Positives = 35/68 (51%)
Frame = +3
Query: 117 PSSCACARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTFIYAP 296
P C C +RPVCG+D TY+N C L C + +T+ DL GTC D C + P
Sbjct: 16 PPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQ-RTNEDLLFFYNGTC--CDKKECEKVGTP 72
Query: 297 VCGTDGNT 320
+C G T
Sbjct: 73 ICDNFGET 80
Score = 42.7 bits (96), Expect = 9e-05
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQC---LLYCERDKTHSD-LKIVKEGTCEEADPC--VCTFIYA 293
C + PVC S G T+ N C + C ++T D L I K C E C C Y+
Sbjct: 818 CPSDFSPVCDSKGSTHQNICHFGVKRCIAERTFGDVLTIDKFEVCNEVKECNNACPKEYS 877
Query: 294 PVCGTDGNTL 323
PVC ++G +
Sbjct: 878 PVCASNGQNI 887
Score = 40.3 bits (90), Expect = 5e-04
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 123 SCACARNLRPVCGSDGKTYHNQCLLYCE-RDKTHSDLKIVKEGTCEEADPCVCTFIYAPV 299
S C + P+CG++G T+ N C L E + +S +++ G C + + C ++PV
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDTN---CPSDFSPV 825
Query: 300 CGTDGNT 320
C + G+T
Sbjct: 826 CDSKGST 832
Score = 39.9 bits (89), Expect = 6e-04
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +3
Query: 129 ACARNLRPVCGSDGKTYHNQCLL-----YCERDKTHSDLKIVK--EGTCEEADPCVCTFI 287
AC + PVC S+G+ N+C L E + T D K+VK +G C + C + +
Sbjct: 871 ACPKEYSPVCASNGQNIVNECELDKIRCLVENNVTTGD-KLVKDYDGECCRIENCDIS-V 928
Query: 288 YAPVCGTDGNT 320
++PVC T+G T
Sbjct: 929 FSPVCDTEGVT 939
Score = 34.3 bits (75), Expect = 0.030
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEA--DPC 272
C + P+C SD TY N C + ++ S+L+++ +G C E PC
Sbjct: 590 CTDDKHPICASDFSTYENLC-QFRKQKCLDSELEVLFKGKCSECLDSPC 637
Score = 30.3 bits (65), Expect = 0.49
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQC-LLY--CERDKTHSDLKIVKEGTCEEADPC--VCTFIYAP 296
C + +PVC S G + N C Y C + I E C + C CT P
Sbjct: 537 CPTDGQPVCDSAGNLHGNLCEFTYSRCIAASKGHQIHIATEENCISKEACQMPCTDDKHP 596
Query: 297 VCGTDGNT 320
+C +D +T
Sbjct: 597 ICASDFST 604
Score = 29.5 bits (63), Expect = 0.86
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +3
Query: 129 ACARNLRPVCGSDGKTYHNQCLLY---CERDKTHSD---LKIVKEGTCEEADPCVCTFIY 290
+C + +PVC S G+T+ + C + C DK H+ L + +G C P CT
Sbjct: 1072 SCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKC---CPAGCTDEL 1128
Query: 291 APVCGTDGN 317
+ +C N
Sbjct: 1129 SVICDQHEN 1137
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +3
Query: 153 VCGSDGKTYHNQCLLYCER----DKTHSDLKIVKEGTCEEADPCVCTFIYAPVCGTDGNT 320
VC S+G+T+ N C+ R + L IV G C C T PVC + G T
Sbjct: 1030 VCDSEGQTHMNHCVYQQRRCMAQTISQKTLNIVHTGECCALASCPKT--GQPVCDSRGRT 1087
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQC 191
C+R+++PVC T+ N C
Sbjct: 375 CSRDVKPVCDEANNTHQNLC 394
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 150 PVCGSDGKTYHNQCLL---YC-ERDKTHSDLKIVKEGTCEEADPC 272
PVC ++G T+ N CL+ C + K +++ +G C PC
Sbjct: 931 PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCN-QPC 974
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 50.0 bits (114), Expect = 6e-07
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEA-DPC 272
C N VCG+DGKTY N+C L K D+ + K G C+EA PC
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPC 370
Score = 39.9 bits (89), Expect = 6e-04
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTC 254
C +RPVC ++G+T+ N+C + + +T S +K+ +GTC
Sbjct: 397 CEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTC 437
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 129 ACARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 257
+C + VCGSDGKTY N+C L ++ + CE
Sbjct: 467 SCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACE 509
Score = 31.9 bits (69), Expect = 0.16
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 123 SCACARNLRPVCGSDGKTYHNQC---LLYCERDKTHSDLKIVKE--GTCEEADPCVC 278
+C + N P+CGSDG Y+NQC + C + L ++ G D C C
Sbjct: 685 TCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQREIHVLPLISHWIGESRVLDSCQC 740
Score = 30.7 bits (66), Expect = 0.37
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 153 VCGSDGKTYHNQCLLY---CERDKTHSDLKIVKEGTCEEADPC 272
VCGSD +Y + C L C K L++ +G C++ +PC
Sbjct: 176 VCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPCKKRNPC 218
Score = 29.9 bits (64), Expect = 0.65
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 147 RPVCGSDGKTYHNQCLLYCERDKTHSDLKIVK--EGTCEEADPCVCTF 284
+ VCG+DG TY ++C + ++ H ++ EG C+E C +
Sbjct: 549 KEVCGTDGVTYSSEC--HMKKSACHQSKFVMTAFEGKCDECLHVQCRY 594
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 153 VCGSDGKTYHNQCLL 197
VCGSDG TY N C L
Sbjct: 880 VCGSDGTTYSNLCEL 894
Score = 26.2 bits (55), Expect(2) = 0.099
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 150 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPC 272
PVC S G Y + C L ++ +++ + G C DPC
Sbjct: 259 PVCSSHGVDYQSSCHLRHHACESKTNITVKFFGRC---DPC 296
Score = 25.0 bits (52), Expect(2) = 0.099
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 276 CTFIYAPVCGTDGNT 320
CT A VCGTDG T
Sbjct: 323 CTMNSAHVCGTDGKT 337
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 50.0 bits (114), Expect = 6e-07
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEA-DPC 272
C N VCG+DGKTY N+C L K D+ + K G C+EA PC
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPC 378
Score = 39.9 bits (89), Expect = 6e-04
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTC 254
C +RPVC ++G+T+ N+C + + +T S +K+ +GTC
Sbjct: 405 CEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTC 445
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 129 ACARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 257
+C + VCGSDGKTY N+C L ++ + CE
Sbjct: 475 SCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACE 517
Score = 33.1 bits (72), Expect = 0.070
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 153 VCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEE 260
VCGSDG TY N C L K D+ V G C++
Sbjct: 819 VCGSDGTTYSNLCELKMFACKHQIDVVPVSMGICDD 854
Score = 30.7 bits (66), Expect = 0.37
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 153 VCGSDGKTYHNQCLLY---CERDKTHSDLKIVKEGTCEEADPC 272
VCGSD +Y + C L C K L++ +G C++ +PC
Sbjct: 184 VCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPCKKRNPC 226
Score = 29.9 bits (64), Expect = 0.65
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 147 RPVCGSDGKTYHNQCLLYCERDKTHSDLKIVK--EGTCEEADPCVCTF 284
+ VCG+DG TY ++C + ++ H ++ EG C+E C +
Sbjct: 557 KEVCGTDGVTYSSEC--HMKKSACHQSKFVMTAFEGKCDECLHVQCRY 602
Score = 26.2 bits (55), Expect(2) = 0.099
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 150 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPC 272
PVC S G Y + C L ++ +++ + G C DPC
Sbjct: 267 PVCSSHGVDYQSSCHLRHHACESKTNITVKFFGRC---DPC 304
Score = 25.0 bits (52), Expect(2) = 0.099
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 276 CTFIYAPVCGTDGNT 320
CT A VCGTDG T
Sbjct: 331 CTMNSAHVCGTDGKT 345
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 42.3 bits (95), Expect = 1e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 120 SSCACARNLRPVCGSDGK---TYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTFIY 290
S+C+C + PVC +G TY N+C+ C ++ DL ++ EG+C A C
Sbjct: 23 STCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQE-NKKDLVLLYEGSCCSAR--YCNMFE 79
Query: 291 APVC 302
PVC
Sbjct: 80 QPVC 83
Score = 33.5 bits (73), Expect = 0.053
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 132 CARNLRPVCGSDGKTYHNQCLLY---C-ERDKTHSDLKIVKEGTCEEADPCVCTFIYAPV 299
C PVC G+T+ N C C +++ + L++ G C E D C V
Sbjct: 125 CPTEWNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVCCE-DMCSAGQTSLTV 183
Query: 300 CGTDGNT 320
C ++GNT
Sbjct: 184 CDSEGNT 190
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 120 SSCACAR-NLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 257
S C+C +L PVC +DG Y + C C ++ +CE
Sbjct: 526 SQCSCENAHLYPVCSADGTAYFSPCHAGCREATQFGSDPVIGFASCE 572
>Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical
protein F53A2.1 protein.
Length = 859
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 183 NQCLLYCERDKTHSDLKIVKEGTCEEADPCVCT 281
N +LY R K HS++ I G C++ PC+CT
Sbjct: 450 NLAVLYKIR-KEHSEIIIHNLGHCDKHLPCICT 481
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 135 ARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVC 278
AR++ CG GK + QC+L + + + + ++G CE+ C
Sbjct: 89 ARSIVSDCGKHGKCVNGQCILNRCQGVSCDEGSMCRDGKCEKVLETFC 136
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 95 NIRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRFE-NRERGYV*GSRSL 271
++R +S+ +++RV+ K+ +RRQ PQP P + Q Q++E E YV SR+L
Sbjct: 566 SMRGSSSPILVRVQLSSKSPDSVRRQVQPQPQP----QPQQQQQYEAYGEADYV--SRNL 619
Query: 272 RL 277
L
Sbjct: 620 PL 621
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 95 NIRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRFE-NRERGYV*GSRSL 271
++R +S+ +++RV+ K+ +RRQ PQP P + Q Q++E E YV SR+L
Sbjct: 788 SMRGSSSPILVRVQLSSKSPDSVRRQVQPQPQP----QPQQQQQYEAYGEADYV--SRNL 841
Query: 272 RL 277
L
Sbjct: 842 PL 843
>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
homolog protein.
Length = 1846
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 138 RNLRPVCGSDGKTYHNQCLLYCER--DKT--HSDLKIVKEGTCEE 260
+ + P C ++G H+QC+ CER D T H+ + +G C E
Sbjct: 380 KEIGPGCDANGDRCHDQCVGGCERVNDATACHACKNVYHKGKCIE 424
>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
formation protein 2 protein.
Length = 1843
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 138 RNLRPVCGSDGKTYHNQCLLYCER--DKT--HSDLKIVKEGTCEE 260
+ + P C ++G H+QC+ CER D T H+ + +G C E
Sbjct: 377 KEIGPGCDANGDRCHDQCVGGCERVNDATACHACKNVYHKGKCIE 421
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 322 KVFPSVPQTGAYMKVQTQGSASSHVP 245
K+F + PQ A VQ+ GS+S+H P
Sbjct: 29 KMFNTGPQNKALPTVQSSGSSSNHAP 54
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 322 KVFPSVPQTGAYMKVQTQGSASSHVP 245
K+F + PQ A VQ+ GS+S+H P
Sbjct: 29 KMFNTGPQNKALPTVQSSGSSSNHAP 54
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 322 KVFPSVPQTGAYMKVQTQGSASSHVP 245
K+F + PQ A VQ+ GS+S+H P
Sbjct: 29 KMFNTGPQNKALPTVQSSGSSSNHAP 54
>U50311-10|AAA92314.1| 135|Caenorhabditis elegans Inhibitor of
serine protease likeprotein protein 2, isoform a
protein.
Length = 135
Score = 25.4 bits (53), Expect(2) = 3.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 201 CERDKTHSDLKIVKEGTCEEADPCVCT 281
C ++T E TCE+ +P VCT
Sbjct: 80 CPENETFFGCGTACEATCEKPNPTVCT 106
Score = 20.6 bits (41), Expect(2) = 3.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Frame = +3
Query: 129 ACARNLRPVCGSDGKTYHNQCLL 197
+C P CG K QC++
Sbjct: 28 SCHNTCEPQCGYTPKACTEQCIM 50
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 294 GHI*RYRRKDRLPHTYPLSR--FSNRCASCPSR 202
G I R D P T+ +R +SNR + CPSR
Sbjct: 578 GRIIACERNDDCPSTHTCTRQLYSNRTSCCPSR 610
>Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical
protein C40H5.5 protein.
Length = 409
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 165 DGKTYHNQCL--LYCERDKTHSDLKIVKEG 248
DGK YHN CL C+ +SD V++G
Sbjct: 126 DGKYYHNNCLRCQMCDIPFEYSDKCYVRDG 155
>U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative
transcription factor TTX-3 protein.
Length = 409
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 165 DGKTYHNQCL--LYCERDKTHSDLKIVKEG 248
DGK YHN CL C+ +SD V++G
Sbjct: 126 DGKYYHNNCLRCQMCDIPFEYSDKCYVRDG 155
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +3
Query: 114 LPSSCACARNLRPVCGSDGKTYHNQCLLYCERDKTHSD-----LKIVKEGTCEEADPCV 275
+P C L GSD K +C + C+ H+D K +G+ E+ + CV
Sbjct: 1006 IPKRRQCDGTLDCRDGSDEKGCKKECAIVCDNSCVHADDLCDGKKKCNDGSDEDEEACV 1064
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,849,717
Number of Sequences: 27780
Number of extensions: 179081
Number of successful extensions: 599
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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