Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F21
         (388 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77270.1 68414.m08999 expressed protein                             31   0.20 
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    29   1.4  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    29   1.4  
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit...    27   4.4  
At4g24680.1 68417.m03533 expressed protein                             27   5.8  
At1g15200.1 68414.m01817 protein-protein interaction regulator f...    27   5.8  
At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r...    26   7.6  

>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 65  TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 241
           TRY+ D +  N R + +  + R  K+LKT + R     + +  P+V  + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 117 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 257
           P+SC   C R   PVCG D  TY   C      D     +++VK+G C+
Sbjct: 68  PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 150 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 257
           PVCG+DG TY   C      D      ++VK+G C+
Sbjct: 53  PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83


>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
           ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01466: Skp1 family, dimerisation domain and
           PF03931:Skp1 family, tetramerisation domain; identical
           to cDNA UFO binding protein UIP2 mRNA, partial cds
           GI:3719210
          Length = 171

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 115 CRRHARAQET*DRSADQTARLTTTSAS 195
           C+RH  A E  + +AD  A  TTT+ +
Sbjct: 60  CKRHVEAAEKSETTADAAAATTTTTVA 86


>At4g24680.1 68417.m03533 expressed protein
          Length = 1480

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 371  RDGANGREHSSEHLLG*SVPVCATDRG 291
            R G +GREH+S H  G   P  A + G
Sbjct: 1146 RQGKHGREHASWHQRGSGAPTKALEDG 1172


>At1g15200.1 68414.m01817 protein-protein interaction regulator
           family protein contains Pfam PF04696: pinin/SDK/memA/
           protein conserved region
          Length = 423

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 77  SDRRCANIRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRFENRER 244
           SD++ + + R S +   R  ++ +T  R     LP+P P VL + +D  +  NR R
Sbjct: 112 SDKKQSGLHRGSWS--QRDAEQRRTNKRYEAFALPEPAPRVLPKNED-PKLVNRNR 164


>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1101

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 186 QCLLYCERDKTHSDLKIVKEGTCEEAD--PCVCTFIYAPVCGT 308
           Q + +CE D+ +  L+ +K+  CE  D    VC  + +  C T
Sbjct: 383 QIICFCECDELNQILEFLKKIKCERDDGTDLVCRVVESFYCAT 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,226,493
Number of Sequences: 28952
Number of extensions: 161549
Number of successful extensions: 526
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)