Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F20
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 120 1e-28
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 81 8e-17
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 72 5e-14
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 3.1
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 4.1
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 26 4.1
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 25 5.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 7.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.5
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 120 bits (289), Expect = 1e-28
Identities = 54/92 (58%), Positives = 68/92 (73%)
Frame = +2
Query: 176 KDGDMLTMHYTGTLSDGHKFDSSFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTI 355
K GD +TMHYTGTL++G KFDSS DR PF +GVGQ+I+GWD+G+ M +GEK KLTI
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77
Query: 356 PSSLGYGNRGAGNVIPPHATLHFEVELINIGD 451
GYG RG +IPP++TL F+VEL+ I D
Sbjct: 78 TPDYGYGPRGFPGLIPPNSTLLFDVELLAIND 109
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 81.4 bits (192), Expect = 8e-17
Identities = 41/102 (40%), Positives = 61/102 (59%)
Frame = +2
Query: 140 VLSVPEGCTTKSKDGDMLTMHYTGTLSDGHKFDSSFDRDQPFTFQLGVGQVIKGWDQGLR 319
V V G + +G + M Y G L +G FD + + +PF F LG G+VI+GWD G+
Sbjct: 261 VTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN-TKGKPFAFILGRGEVIRGWDVGVA 319
Query: 320 DMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFEVELINI 445
M G +RK+TIP+ + YGN+ IP ++TL FEV+L+ +
Sbjct: 320 GMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 72.1 bits (169), Expect = 5e-14
Identities = 39/110 (35%), Positives = 65/110 (59%)
Frame = +2
Query: 116 EVTELKIDVLSVPEGCTTKSKDGDMLTMHYTGTLSDGHKFDSSFDRDQPFTFQLGVGQVI 295
+V E + V +G +K ++M Y G L++G FD + +PFTF LG+ +VI
Sbjct: 254 QVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVI 312
Query: 296 KGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFEVELINI 445
KGWD G+ M VG +R + IP+++ YG++ IP ++ L F+V+L+ +
Sbjct: 313 KGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -3
Query: 192 SISPSLDFVVHPSGTLKTSILSSVTSESAIVAPTRANITKTQRNIMTNLRKVISDI 25
S S S V SGT L+S T ++ + T+A +TK Q N T L +++ +
Sbjct: 381 SNSKSKKKVTSISGTSFFKNLASSTKPTSASSSTKAPLTKQQTNPSTPLSSIMAGL 436
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 366 WATAIAEPAM*SHLTPLFTSKSN*STSVTHPR 461
W T + + H+ +FT+ N ST +TH R
Sbjct: 290 WVTILPARKLGPHMEHVFTNLQNNSTPMTHVR 321
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +2
Query: 383 GAGN-VIPPHATLHFEVEL 436
G GN +IPP + H+EVEL
Sbjct: 44 GHGNLIIPPDVSAHYEVEL 62
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 374 GNRGAGNVIPPHATLHFEVELINIGDSP 457
G G+G + P AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +2
Query: 242 SFDRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLG 370
SF +D + G ++ WD + CV E+ + P + G
Sbjct: 305 SFSQDGNYLLSRGEDNALRVWDLRNSNKCVNERIDILTPKAGG 347
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/53 (16%), Positives = 28/53 (52%)
Frame = +2
Query: 35 ITFRKFVMMLRCVFVMLALVGATIADSEVTELKIDVLSVPEGCTTKSKDGDML 193
IT + +++L+C+ ++L + + ++ + + +PE C T + +++
Sbjct: 1188 ITLKDKLLLLQCLKMLLEVSDRKLIVEKLRPILLPSFEIPEPCNTATSVQELI 1240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,572
Number of Sequences: 5004
Number of extensions: 41936
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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