Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F20
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      175   3e-44
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   6e-29
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                35   0.037
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.1  
SB_52570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   28   4.2  
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)                     28   4.2  
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 28   5.6  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 28   5.6  
SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  175 bits (425), Expect = 3e-44
 Identities = 85/158 (53%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
 Frame = +2

Query: 71  VFVMLALVGATI-ADSEVTELKIDVLSVPEGCTTKSKDGDMLTMHYTGTLSDGHKFDSSF 247
           +  ++A  G  + A+    ELKI+V+S PE CT K+  GD L+MHYTG L++G+KFDSS 
Sbjct: 7   LLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSL 66

Query: 248 DRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKLTIPSSLGYGNRGAGNVIPPHATLHFE 427
           DR + F F LG G VI+GW+QGL DMC+GEKRKLTIP  L YG  GAG  IPPHATL+ +
Sbjct: 67  DRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMD 126

Query: 428 VELINI-GDSPPTTNVFKEIDADQNNMLSREEVSEYLK 538
           VEL+ I G      NVF  ID + + +L++EEV  YLK
Sbjct: 127 VELVEIQGSKESDPNVFGMIDKNNDKVLTQEEVKNYLK 164


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score =  124 bits (298), Expect = 6e-29
 Identities = 59/145 (40%), Positives = 93/145 (64%), Gaps = 7/145 (4%)
 Frame = +2

Query: 125 ELKIDVLSVPEGCTTKSKDGDMLTMHYTGTLSDGHKFDSSFDRD---QPFTFQLGVGQVI 295
           +++++   VP  C  K+K GD + +HYTG + DG  FD++ D     QPF F +G G VI
Sbjct: 99  KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVI 158

Query: 296 KGWDQGLRDMCVGEKRKLTIPSSLGYGNRGA----GNVIPPHATLHFEVELINIGDSPPT 463
           KG++QG+  MCVG+KRK+ IP +L YG +G+    GN+   + TL + +EL ++   PP 
Sbjct: 159 KGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVRKPPPH 218

Query: 464 TNVFKEIDADQNNMLSREEVSEYLK 538
           +++F  +D + +  LSREEVS Y++
Sbjct: 219 SDMFSHMDENGDRKLSREEVSAYMR 243


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 35.1 bits (77), Expect = 0.037
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 182 GDMLTMHYTGTLSD----GHKFDSSFDRDQPFTFQLGVGQVIKG 301
           GD + + YTG L +    G  FDS+   D+ F F+ G G+VIKG
Sbjct: 122 GDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 230 KFDSSF--DRDQPFTFQLGVGQVIKGWDQGLRDMCVGEKRKL-TIPSSLGYGNRG 385
           K DS+F   + +P +F   +G    GWD G      G  +KL T PS+ G  N G
Sbjct: 291 KLDSTFIWSKIRPMSFPCVLGMHEVGWDDGTFHSSTGAAQKLGTRPSNGGTKNSG 345


>SB_52570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -2

Query: 340 FLTYTHVSKSLIPAFDDLTDAELKGEWLIAIKTGVELMTIAQSTRVVHGQHITIFRLRST 161
           + T ++ ++ +IP  D LT  +++        TG    TI+ + R V   H+T  ++R+T
Sbjct: 4   YQTNSYANRCVIP--DHLTRQQVRTTRPSHTPTGAYYQTISHANRCVLPDHLTRQQVRTT 61

Query: 160 SFGHAQ 143
              H Q
Sbjct: 62  RPSHTQ 67


>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
 Frame = +1

Query: 271 SARRRSSHQRLGSRTSRH-VCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRSRTNQH- 444
           S    S H+     TSRH   R ET + H       +   R    TSRH S R +T++H 
Sbjct: 37  SRHETSRHESSPHETSRHETSRHET-SRHERSRHETRQHERSRHKTSRHESSRHKTSRHG 95

Query: 445 --R*LTPDHQ--RVQGNRRGPKQH 504
             R  T  H+  R + +R   +QH
Sbjct: 96  RSRHKTSRHETSRHERSRHETRQH 119


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 373  VAQGRRDGQFTFLTYTHVSKSLIPAFDDLTD 281
            + +G +DG + FL   H+S S +P  D L +
Sbjct: 3218 IKEGVKDGNWVFLANCHLSLSWMPQLDKLVE 3248


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = +1

Query: 250 SRSAIHLSARRRSSHQRLGSRTSRHVCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRS 429
           SRS+  LS+RRRS H+R   R         +          + SRSR      R  S RS
Sbjct: 279 SRSS-SLSSRRRSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRRRS-RS 336

Query: 430 RTNQHR 447
           R+ +HR
Sbjct: 337 RSTEHR 342


>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
          Length = 284

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 195 VSISPSLDFVVHPSGTLKTSILSSVTSESAIVAPTRANITKTQ 67
           V+I PS    +H S ++  S+ SSV   S  VAPT    T T+
Sbjct: 48  VTIVPST-ISMHSSPSISVSVASSVMPSSTSVAPTTPPATTTK 89


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 24/62 (38%), Positives = 33/62 (53%)
 Frame = +1

Query: 253 RSAIHLSARRRSSHQRLGSRTSRHVCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRSR 432
           RS  H S R RS H+R  SR++    R    +D  F    R+SRSR  + +  HS  RSR
Sbjct: 256 RSRYHRS-RSRSRHRR--SRSNSPSMRK---SDRKFKKSQRKSRSRSRNRSRSHSRKRSR 309

Query: 433 TN 438
           ++
Sbjct: 310 SS 311


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 274 ARRRSSHQRLGSRTSRHVCR*ET*TDHPFFLGLRQSRSRQCDPTSRHSSLRSRTN-QHR 447
           +R RS  +R  SR+ R   R  + + H       +SRSR   P  RHS  RS T+ +HR
Sbjct: 226 SRSRSPRRRRRSRSPRRRRRSRSPSPHH---RSHRSRSRSRSPRRRHSRSRSPTHRRHR 281


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 137 DVLSVPEGCTTKSKDGDML-TMHYTGTLSDGHKFDSSFDR 253
           D   VP GC + + DG++L   + T  + + H  D +FDR
Sbjct: 59  DEPGVPAGCNSTAFDGNILEAYNLTMNIFEKHFVDRTFDR 98


>SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -2

Query: 340 FLTYTHVSKSLIPAFDDLTDAELKGEWLIAIKTGVELMTIAQSTRVVHGQHITIFRLRST 161
           + T ++ ++ ++P  D LT  +++        TGV   TI+ + R V   H+T  ++R+T
Sbjct: 643 YQTISYANRCVLP--DHLTRQQVRTTRPSHTPTGVYYQTISHANRCVLPDHLTRQQVRTT 700

Query: 160 SFGH 149
              H
Sbjct: 701 RPSH 704


>SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1254

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = -2

Query: 340 FLTYTHVSKSLIPAFDDLTDAELKGEWLIAIKTGVELMTIAQSTRVVHGQHITIFRLRST 161
           + T +H ++ ++P  D L   +++       +TG    TI+ + R V   H+T  ++R+T
Sbjct: 664 YQTISHANRCVLP--DHLIRQQVRTTRPSNTQTGAYYQTISHANRCVLPDHLTRQQVRTT 721

Query: 160 SFGH 149
              H
Sbjct: 722 RPSH 725


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,606,128
Number of Sequences: 59808
Number of extensions: 333817
Number of successful extensions: 980
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)