Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F19
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p...    28   3.6  
At1g49510.1 68414.m05549 expressed protein                             28   4.7  

>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 477

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 179 ILVLLVGFPRFAQATMST---AMWSLFFIVQILLNVSGHSVLDPDTLKDVFGEQDQKY 343
           I+ +  G+   A ATM     +MW  F +VQ     S H  L+PD  + VFG   +KY
Sbjct: 185 IVAVRNGYHGNAAATMGATGQSMWK-FNVVQN----SVHHALNPDPYRGVFGSDGEKY 237


>At1g49510.1 68414.m05549 expressed protein
          Length = 240

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 203 PRFAQATMSTAMWSLFFIVQILLNVSGH 286
           P FA   +  A+WS+FF  +   N SG+
Sbjct: 203 PHFANGVLLRALWSMFFWYKKTRNTSGN 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,743,872
Number of Sequences: 28952
Number of extensions: 192484
Number of successful extensions: 389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)