Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F18
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 27 2.4
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 27 3.2
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 4.2
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 26 4.2
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 26 5.5
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 26 5.5
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 5.5
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 5.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 7.3
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 313 NSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTV 492
NSIF Q PTT+ T T + S V N G +T P S PT+
Sbjct: 64 NSIFGKTQQQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVDET 123
Query: 493 N 495
N
Sbjct: 124 N 124
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 226 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKI 330
K+YR L I+ LVGS ++ D+ + +S+ +I
Sbjct: 330 KLYRHLTIVGLVGSIDNDMSSTDVTIGAFSSLHRI 364
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 334 NQAPTTTKKPTMTVSAPSAVPTVNTNGNRGR 426
+ +PT T P + VS PSA P + + N +
Sbjct: 164 SSSPTNTPSPNLPVSQPSASPHYSGDKNSAK 194
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -1
Query: 619 IPPPDR--F**CTAYRWYLQSELLL 551
+PPP+R + C RWY ELLL
Sbjct: 203 LPPPNRREYTGCVVTRWYRSPELLL 227
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 328 IPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNP 498
IPN T + SAP+ TV++ ++ + T D + P AP ++ P
Sbjct: 145 IPNSEQTVDTLDAASSSAPNFTHTVSSASSQKQGSTSLTDTENQKAHPAAAPQSLTP 201
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = -2
Query: 384 WGTNSH-----GWFLSSCWCLIRYFENAVYFFEVYIIGVCL 277
WG H W ++ WCL F + + +F V GV L
Sbjct: 349 WGMARHINYFGDWIMAWAWCLPAGFGSPIPYFYVAYFGVLL 389
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 531 GWFLSSSGDGYRIDCSRSLRRYFENTVYIIGV 436
GW LS R+ + LR++FE +I G+
Sbjct: 337 GWMLSDINTTVRLTVVKVLRKFFETDSFIGGL 368
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 358 KPTMTVSAPSAVPT 399
KPT T SAPSA PT
Sbjct: 292 KPTATTSAPSASPT 305
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 316 SIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNG 414
S F+ PN+AP+T + +P+ NTNG
Sbjct: 295 SNFRSPNRAPSTNNRYRGWNGSPTPAAGNNTNG 327
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 226 KMYRILAILVLVGSAHAQANANDIDLEEINSIFK--IPNQAPTTTKKPTMTV 375
K+ ++ + + +AHA NANDI +N K + P +KK +++
Sbjct: 43 KVVQLRSFIPFKNAAHALENANDISEGVLNDFLKNFLELNLPKASKKKKVSL 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,817
Number of Sequences: 5004
Number of extensions: 55149
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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