Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F18
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    31   1.1  
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422...    30   1.4  
12_02_0230 + 15973390-15974645,16002878-16003097                       29   3.3  
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317...    29   3.3  
04_01_0121 + 1253201-1253584                                           28   5.7  
05_03_0027 + 7471834-7471984,7472359-7472423,7472811-7472828           28   7.6  

>04_01_0293 +
           3881375-3883698,3906619-3907636,3907820-3908309,
           3914729-3914823,3914854-3915213
          Length = 1428

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
 Frame = +1

Query: 328 IPNQAPTTTKKPTMTVSAP---SAVPTVNTN-GNRGRYDTDPDDINSVFKIPTQAPGTVN 495
           I NQAP     PT    A     + P V  N G+ G Y         V  +PTQ+  TV 
Sbjct: 281 IRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPTQSNSTVP 340

Query: 496 PVXXXXXXXXXXXXESAPSAIVPTVNTNDTP 588
                         + AP  I+ T   N  P
Sbjct: 341 ASKARVNHVAAAEAQDAPDVILGTFLVNSVP 371


>01_06_1655 +
           38940790-38940864,38941245-38942057,38942149-38942268,
           38942883-38943566
          Length = 563

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 322 FKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 483
           ++I    P T   P    S P+  P V+    + R D D D    V  +P  +P
Sbjct: 101 YQITPAKPATVTAPAAAASLPAPPPPVSARERQRRRDVDDDKPAIVLPLPPPSP 154


>12_02_0230 + 15973390-15974645,16002878-16003097
          Length = 491

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
 Frame = +1

Query: 328 IPNQAPTTTKKPTMTVSAP---SAVPTVNTN-GNRGRYDTDPDDINSVFKIPTQAPGTVN 495
           I NQAP     PT    A     + P V  N G+ G Y         V  +P Q+  TV 
Sbjct: 54  IRNQAPRPVAAPTQQQPAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSTVP 113

Query: 496 PVXXXXXXXXXXXXESAPSAIVPTVNTNDTP 588
                         + AP  I+ T   N  P
Sbjct: 114 ASKARVNHVAAAEAQDAPDVILGTFPVNSVP 144


>04_04_0962 +
           29728983-29729034,29729622-29731369,29731656-29731742,
           29732035-29732199,29732437-29732526,29732863-29733027,
           29733124-29733418,29733550-29733764,29733879-29733947,
           29734107-29734184,29734466-29734529,29734658-29734897,
           29734985-29735124
          Length = 1135

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 274 AQANANDIDLEEINSIFKIPNQAPTTTK--KPTM 369
           ++A AN I +E I    K+P++APT T+  KP M
Sbjct: 892 SRAEANMISVERILQYTKLPSEAPTITEGSKPPM 925


>04_01_0121 + 1253201-1253584
          Length = 127

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 346 TTTKKPTMTVSAPS-AVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 483
           TT K+    ++ PS A+P + T     R  T+ D +N+V+K   Q P
Sbjct: 33  TTVKESIADLNLPSIAIPNLRTFQAMTRSVTNVDQVNAVYKAFLQPP 79


>05_03_0027 + 7471834-7471984,7472359-7472423,7472811-7472828
          Length = 77

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 549 WGTFNGGWFLSSSGDGYRIDCSRSLRRYFENTVYIIG 439
           W  FNG  +L S      + CSR++  YF++  Y++G
Sbjct: 43  WDDFNGPNYLFSGECSMLMSCSRAV--YFKDARYLLG 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,011
Number of Sequences: 37544
Number of extensions: 359842
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)