Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F18
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_24977| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_53827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_31855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_31075| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9) 29 3.4
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 29 3.4
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_27650| Best HMM Match : Binary_toxA (HMM E-Value=8.2) 29 4.4
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0) 28 5.9
SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1) 28 5.9
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_6912| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 7.7
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Frame = +1
Query: 325 KIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQ-APGTVNPV 501
K APT T PT+T + P PT T P PTQ P P
Sbjct: 2 KFTPTAPTLTT-PTLTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPS 60
Query: 502 XXXXXXXXXXXXESAPSAIVPTVNTNDTPCITK 600
P+ P T T +TK
Sbjct: 61 PTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTK 93
>SB_24977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +1
Query: 298 DLEEINSIFKIPNQ-APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDP----DDINSVF 462
D+E ++++ N +P+ K + VSA + + GN+G + P + I+ +F
Sbjct: 61 DIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQVPLLWANTISEIF 120
Query: 463 KIPTQAPGT--VNPV 501
K PT +NP+
Sbjct: 121 KEPTHKMTVMMINPI 135
>SB_53827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -2
Query: 555 C*WGTFNGG--WFLSSSG-DGYRIDCSRSLRRYFENTVYIIGVCIIASSITV 409
C W T G W + G D ++ID ++ F V +I C++ I++
Sbjct: 142 CEWSTIINGVFWHIIEGGNDKFKIDLFSAINADFAAAVILISYCVVLGKISI 193
>SB_31855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +1
Query: 298 DLEEINSIFKIPNQ-APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDP----DDINSVF 462
D+E ++++ N +P+ K + VSA + + GN+G + P + I+ +F
Sbjct: 61 DIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQVPLLWANTISEIF 120
Query: 463 KIPTQAPGT--VNPV 501
K PT +NP+
Sbjct: 121 KEPTHKMTVMMINPI 135
>SB_31075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +1
Query: 298 DLEEINSIFKIPNQ-APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDP----DDINSVF 462
D+E ++++ N +P+ K + VSA + + GN+G + P + I+ +F
Sbjct: 61 DIEAYSTLYPETNSDSPSVKSKGALLVSAKAEAKNIIAAGNKGNINQVPLLWANTISEIF 120
Query: 463 KIPTQAPGT--VNPV 501
K PT +NP+
Sbjct: 121 KEPTHKMTVMMINPI 135
>SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)
Length = 219
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Frame = +1
Query: 286 ANDIDLEEINSIFKIPNQAPTTTKKPTM--------TVSAPSAVPTV--NTNGNRGRYDT 435
A D L++++SI K P+ +P +KP M T+ AP +P + + + GR
Sbjct: 124 ARDPSLKQLDSILK-PSDSPP--RKPGMLKHRESAPTLHAPRTIPRDLRSMSHDSGRVPR 180
Query: 436 DPDDINSVFKIPTQAPGTVNPV 501
DP+ IP +PGT++PV
Sbjct: 181 DPE------LIPLSSPGTLSPV 196
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/88 (25%), Positives = 25/88 (28%)
Frame = +1
Query: 340 APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVXXXXXX 519
A TT KPT T + PT T T P T P T P
Sbjct: 71 ATTTPTKPTTTTPPATTTPTTPTT------TTPPATTTPTKPTTTTPPATTTPTKPTTTT 124
Query: 520 XXXXXXESAPSAIVPTVNTNDTPCITKT 603
+ P+ P T T T T
Sbjct: 125 PPGTTTPTKPTTTTPPATTTPTKPTTTT 152
>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 541 SAPSAIVPTVNTNDTPCITKTG 606
SAP+++ PTV+ N+ C++K G
Sbjct: 409 SAPTSLTPTVDQNNNCCLSKKG 430
>SB_27650| Best HMM Match : Binary_toxA (HMM E-Value=8.2)
Length = 159
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 289 NDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNT 408
++ID E N I + N +TK PTM SA P++NT
Sbjct: 108 SEIDASEGNKIIGLDNSILASTKPPTMK-RVRSAGPSLNT 146
>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
Length = 1452
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 271 HAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP-TVNTNGN 417
H +++A +E INSI + + PTTT++ +V P +N NG+
Sbjct: 588 HLESHAGHYPIETINSIRQRHGRPPTTTEELLNSVPQGDTDPNALNRNGD 637
>SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)
Length = 438
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Frame = +1
Query: 292 DIDLEEINSIFKIPNQAPTTTKKPT-MTVSAPSAVPTVNTNGNRGRY------DTDP--- 441
D+D+ +N +FK N+A T +P+ +T S T + GR D P
Sbjct: 256 DLDVAFVNPMFK--NRAKITETEPSPITPEDESMASTGEISSEEGRVNPLFEPDRSPNGS 313
Query: 442 -DDINSVFKIPTQAPGTVNPV 501
DD+ ++ IP+ G VNP+
Sbjct: 314 EDDLPTIPNIPSTDEGQVNPL 334
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 50 PGIHYSRAPPPRG 12
PG HYSR PPP G
Sbjct: 354 PGSHYSRVPPPDG 366
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 286 ANDI----DLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 396
AND+ +L ++ +P Q P K+P +TVS PS P
Sbjct: 1204 ANDLQSSTELAQVPMQTTVPKQIPEEFKEPEITVSEPSLEP 1244
>SB_6912| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 440
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 286 ANDI----DLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 396
AND+ +L ++ +P Q P K+P +TVS PS P
Sbjct: 354 ANDLQSSTELAQVPMQTTVPKQIPEEFKEPEITVSEPSLEP 394
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,509,128
Number of Sequences: 59808
Number of extensions: 426897
Number of successful extensions: 1361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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