Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F18
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    30   1.2  
At1g69310.2 68414.m07949 WRKY family transcription factor contai...    30   1.2  
At1g69310.1 68414.m07948 WRKY family transcription factor contai...    30   1.2  
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t...    30   1.6  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    24   4.1  
At5g15060.1 68418.m01765 hypothetical protein                          28   4.8  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    27   8.4  
At2g44990.1 68415.m05602 dioxygenase-related low similarity to c...    27   8.4  

>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 226 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKIPNQAPT-TTKKPTMTVSAPSAVP 396
           + + +L +L L  +    A+A     ++  S    P +APT TTK P+    AP+A P
Sbjct: 3   RQFVVLVLLTLTIATAFAADAPSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAP 60


>At1g69310.2 68414.m07949 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 287

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +1

Query: 436 DPDDINSVFKIPTQAPGTVNPVXXXXXXXXXXXXESAPSAIVPTVNTNDTPCITKTGQEG 615
           DP    S   +P   P   NP              +APS  +P   T DTP ++   +EG
Sbjct: 218 DPHSFTSHHHLPPPLP---NPYYYQELLHQLHRDNNAPSPRLPRPTTEDTPAVSTPSEEG 274

Query: 616 V 618
           +
Sbjct: 275 L 275


>At1g69310.1 68414.m07948 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 287

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +1

Query: 436 DPDDINSVFKIPTQAPGTVNPVXXXXXXXXXXXXESAPSAIVPTVNTNDTPCITKTGQEG 615
           DP    S   +P   P   NP              +APS  +P   T DTP ++   +EG
Sbjct: 218 DPHSFTSHHHLPPPLP---NPYYYQELLHQLHRDNNAPSPRLPRPTTEDTPAVSTPSEEG 274

Query: 616 V 618
           +
Sbjct: 275 L 275


>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 917

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +1

Query: 391 VPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVN---PVXXXXXXXXXXXXESAPSAIV 561
           V  V  NG+ G  D D DDI  VFK  +    T N   P+            +S+P    
Sbjct: 7   VKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSPPMRS 66

Query: 562 PTVNTN 579
           P  + N
Sbjct: 67  PLTSPN 72


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 24.2 bits (50), Expect(2) = 4.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 44  IHYSRAPPPRGAP 6
           +HYS  PPP  AP
Sbjct: 687 VHYSSPPPPPSAP 699



 Score = 22.6 bits (46), Expect(2) = 4.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 50  PGIHYSRAPPP 18
           P +HYS  PPP
Sbjct: 665 PPVHYSSPPPP 675


>At5g15060.1 68418.m01765 hypothetical protein 
          Length = 245

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 250 LVLVGS--AHAQANANDIDLEEI 312
           L+LVGS  +HA AN ND++LE +
Sbjct: 170 LILVGSNLSHANANENDVNLEAL 192


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 253 VLVGSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYD 432
           V  G + A +   D D  EI  + K  N+   +T+KP +     +    V T+GN  R D
Sbjct: 373 VAQGGSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDGNSKRSD 432


>At2g44990.1 68415.m05602 dioxygenase-related low similarity to
          carotenoid cleavage dioxygenase 1 [Arabidopsis
          thaliana] GI:3096910; contains Pfam profile PF03055:
          Retinal pigment epithelial membrane protein
          Length = 618

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 77 PHLLPNSCSPGIHYSRAPPPRGAP 6
          P  LP   SP IH+ + PPP   P
Sbjct: 7  PKFLPPLKSPPIHHHQTPPPLAPP 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,150,294
Number of Sequences: 28952
Number of extensions: 285343
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)