Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F17
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   8.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.9  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 235 EIDFTPPFARVPMIASLEKI 294
           E+ F P   RV ++ S+EK+
Sbjct: 486 EVRFNPHTGRVEVLDSVEKL 505


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 418  QEVGL*SLAVGIPPRV 371
            ++V L  LAVG+PP V
Sbjct: 1322 EDVTLPCLAVGLPPPV 1337


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 379 VECPPPRTTARLLDKLVGEFLEDKC 453
           V+C    T   +L KL+ +  ED C
Sbjct: 647 VDCDDVGTFGAILKKLLPKVYEDYC 671


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 13/61 (21%), Positives = 23/61 (37%)
 Frame = +1

Query: 199 KYRPDGPSGEEVEIDFTPPFARVPMIASLEKILNVKLPSPDTLDTAESNALLSQLCEKHE 378
           +YRPD PS   +     P   +  ++ +  K+    +     L    S  L +Q    H 
Sbjct: 107 EYRPDSPSSMHMANTAAPNGHQTQVVYASCKLQAAAVTQNGVLGPTGSPPLTTQSMNNHH 166

Query: 379 V 381
           +
Sbjct: 167 M 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,404
Number of Sequences: 336
Number of extensions: 2871
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)