Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F17
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 162 3e-41
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 59 5e-10
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 34 0.015
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 30 0.19
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 29 0.57
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 0.75
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 4.0
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.2
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 162 bits (394), Expect = 3e-41
Identities = 72/127 (56%), Positives = 92/127 (72%)
Frame = +1
Query: 148 KQCCXGMVKSIHGTYKVKYRPDGPSGEEVEIDFTPPFARVPMIASLEKILNVKLPSPDTL 327
++ G+VK + G+YKV Y P+GP G + E+DF+ P+ R+ MI LE+ LN K P D L
Sbjct: 359 EELLSGLVKDLTGSYKVPYHPEGPEGPKWELDFSRPWRRINMIEYLEEKLNTKFPPGDQL 418
Query: 328 DTAESNALLSQLCEKHEVECPPPRTTARLLDKLVGEFLEDKCINPTFILDHPQIMSPLSK 507
T E+NA L LC KH VEC PP+T +RLLDKLVGEF+E +CINPTFI+ HPQ+MSPL+K
Sbjct: 419 HTPEANAFLRDLCAKHGVECAPPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAK 478
Query: 508 YHRDIPG 528
YHR G
Sbjct: 479 YHRSDAG 485
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/48 (68%), Positives = 36/48 (75%)
Frame = +2
Query: 2 LVVGGLDRVMKSEDSSRNEGIDLTHNPEFTTCEFYMAYADYNDLITIT 145
LVVGGLDRV + RNEG DLTHNPEFT+ EFY AYADY DL+ T
Sbjct: 311 LVVGGLDRVYEIGRQFRNEGADLTHNPEFTSIEFYQAYADYYDLMDTT 358
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 58.8 bits (136), Expect = 5e-10
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 2 LVVGGLDRVMKSEDSSRNEGIDLTHNPEFTTCEFYMAYADYNDLITIT 145
LV+GG++RV + + RNEGID THNPEFT+CE Y AY + + +T
Sbjct: 266 LVIGGMNRVFELGKNFRNEGIDATHNPEFTSCEAYCAYLNLEGMKKLT 313
Score = 53.2 bits (122), Expect = 2e-08
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +1
Query: 238 IDFTPPFARVPMIASLEKILNVKLPSPDTLDTAES-NALLSQLCEKHEVECPPPRTTARL 414
+D F + I +L+K LNV+L SP LD +E+ L + ++ E+ P T A L
Sbjct: 335 VDLEKGFEVIEFIPALQKELNVEL-SP--LDNSENCRKQLISIFKRCEIMLPKTCTVAHL 391
Query: 415 LDKLVGEF-LEDKCINPTFILDHPQIMSPLSK 507
LDKL L+ +P F+++HP++MSPL+K
Sbjct: 392 LDKLFDSLVLKYNTSSPKFVINHPEVMSPLAK 423
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 33.9 bits (74), Expect = 0.015
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 368 SHNWLRRAFDSAVSSVSGEGNFTFKIFSKLAIIGTL 261
SHNW+ R A+ + E + TF++F++L I L
Sbjct: 366 SHNWVERCCKKAIDLAAQEVSLTFRLFAELGIFSVL 401
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = -2
Query: 470 INVGLMHLSSRNSPTNLSRSRAVVLGGGHSTSCFSHNWLRRAFDSAVSSVSGEGNFTFKI 291
+N + L S P+++S ++ CFS WL + F+ +++ S N K+
Sbjct: 568 LNSSISVLKSMRIPSSVSYEAVIISMVLSKNPCFSSEWLIKCFEDMIANESASKNEIMKL 627
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 28.7 bits (61), Expect = 0.57
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 169 VKSIHGTYKVKYRPDGPSGEEVEIDFTPPFARVPMIASLE 288
VK+I T+ +Y+P P+G + + ++ P+I SLE
Sbjct: 510 VKAIMNTFYKQYKPFDPAGNKHDANYDDIIELDPLIGSLE 549
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 28.3 bits (60), Expect = 0.75
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 259 ARVPMIASLEKILNVKLPSPDTLDTAE 339
AR P+ L+K+ KLP+PD LDTA+
Sbjct: 1369 ARYPIFWGLKKV--GKLPNPDPLDTAQ 1393
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 256 FARVPMIASLEKILNVKLPSPDTLDTAE 339
+AR P+ L+KI KLP+PD DT E
Sbjct: 1373 WARYPIFWGLKKI--GKLPNPDPTDTDE 1398
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 24.6 bits (51), Expect = 9.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 340 SNALLSQLCEKHEVECPPPRTTARLLDKLVGEFLEDKCINPTFILDHPQI 489
SN L + + H CP + L K +G+ L D C + ++D P +
Sbjct: 439 SNPTLLEFMQYHIDHCPAEKGETYQLAKTLGQQLIDNCKS---VIDAPPV 485
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,269
Number of Sequences: 5004
Number of extensions: 46655
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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