Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F17
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 150 8e-37
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 55 3e-08
11_03_0013 - 8957277-8957355,8957485-8957591,8957700-8957915,895... 34 0.081
04_03_0379 + 15141127-15141231,15141566-15141769,15141856-151420... 31 0.43
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052... 29 2.3
04_03_0518 - 16727138-16727379,16727457-16727652 29 3.1
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 28 5.3
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 150 bits (363), Expect = 8e-37
Identities = 67/122 (54%), Positives = 87/122 (71%)
Frame = +1
Query: 163 GMVKSIHGTYKVKYRPDGPSGEEVEIDFTPPFARVPMIASLEKILNVKLPSPDTLDTAES 342
GMVK + G YK+KY +G +EIDFTPPF ++ MI LE + KL P L + E+
Sbjct: 387 GMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRKIDMIEELEAM--AKLNIPKDLSSDEA 444
Query: 343 NALLSQLCEKHEVECPPPRTTARLLDKLVGEFLEDKCINPTFILDHPQIMSPLSKYHRDI 522
N L C K++V+CPPP+TT RLLDKLVG FLE+ C+NPTFI++HP+IMSPL+K+HR
Sbjct: 445 NKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSR 504
Query: 523 PG 528
PG
Sbjct: 505 PG 506
Score = 86.6 bits (205), Expect = 1e-17
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = +2
Query: 2 LVVGGLDRVMKSEDSSRNEGIDLTHNPEFTTCEFYMAYADYNDLITIT 145
LVVGGLDRV + RNEGIDLTHNPEFTTCEFYMAYADYNDLI +T
Sbjct: 334 LVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLIELT 381
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = +2
Query: 5 VVGGLDRVMKSEDSSRNEGIDLTHNPEFTTCEFYMAYADYNDLITI 142
VVGGL++V + RNEGI HNPEFTT E Y AY+DY ++ +
Sbjct: 299 VVGGLEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNL 344
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 235 EIDFTPPFARVPMIASLEKILNVKLPS-PDTLDTAESNALLSQLCEKHEVECPPPRTTAR 411
EI P+ R M + +++ + S + L++A++ A + + +
Sbjct: 426 EISLERPWRRETMHSLVKEATGIDFNSFGEDLESAKNAARGIKTESNENISLQACSSVGH 485
Query: 412 LLDKLVGEFLEDKCINPTFILDHPQIMSPLSKYHRDIPG 528
+L+++ +E + PTF+LD+P +SPL+K HR G
Sbjct: 486 VLNEVFETVVESSLVQPTFVLDYPVEISPLAKPHRRYAG 524
>11_03_0013 -
8957277-8957355,8957485-8957591,8957700-8957915,
8958191-8958907,8959483-8959656,8960292-8960546
Length = 515
Score = 33.9 bits (74), Expect = 0.081
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -2
Query: 422 LSRSRAVVLGGGHSTSC--FSHNWLRRAFDSAVSSVSGEG 309
LS A +LGG + +SC +S +W+ R D VS V+GEG
Sbjct: 411 LSVPEACMLGGVYYSSCQLYSRHWIIRWRDRVVSDVNGEG 450
>04_03_0379 +
15141127-15141231,15141566-15141769,15141856-15142037,
15142898-15143036,15143111-15143299,15143943-15144050,
15144143-15144222,15144549-15144600,15144731-15144799,
15144876-15144910,15145351-15145510,15147414-15147470,
15147566-15147622,15147971-15148027,15148126-15148182,
15148551-15148670,15148760-15148996,15149550-15149591
Length = 649
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 238 IDFTPPFARVPMIASLEKILNVKLPSPDTLDTAESNAL---LSQLCEKHEVECPPPRTTA 408
+D T P ++ +++ L ++ ++ P P D + L + CE +V+CP T
Sbjct: 69 LDHTDPGVKLAVVSCLTTLIKIRAPDPPYDDDVMKDVLKLVVGVFCELDDVDCPSYGTRV 128
Query: 409 RLL 417
+L
Sbjct: 129 SML 131
>05_06_0065 -
25303143-25303769,25303868-25304758,25305096-25305202,
25305518-25305629
Length = 578
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 241 DFTPPFARVPMIAS-LEKILNVKLPSPDTLDTAESNALLSQLCEKHEVECPPPRTTARLL 417
D PP +P + S E L+ LPS + A S + +H+ + PPPR ++R
Sbjct: 500 DMVPPLPPLPSMKSPSESWLSRALPSVSSNPPATS---FLGIHVQHKKQSPPPRCSSRAP 556
Query: 418 DKLVGE 435
KLV +
Sbjct: 557 AKLVAD 562
>04_03_0518 - 16727138-16727379,16727457-16727652
Length = 145
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 434 SPTNLSRSRAVVL--GGGHSTSCFSHNWLRRAFDSAVSSVSGEG 309
S T R+ VL G G C H+WLR S VS GEG
Sbjct: 91 SDTEQKRTYPPVLLAGEGGDNDCGVHHWLRLPLPSLVSWKRGEG 134
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 346 ALLSQLCEKHEVECPPPRTTARLLDKLVGEFLEDKCINPTFILDHPQI 489
AL++ CE H + P P + +L L L+D + L HP +
Sbjct: 305 ALIANWCESHNIRLPDPMKSLKLNFPLAASALQDSSTTGSSPL-HPTV 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,078,270
Number of Sequences: 37544
Number of extensions: 311988
Number of successful extensions: 731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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