Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F17
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)             170   5e-43
SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   4e-07
SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)              30   1.4  
SB_16695| Best HMM Match : MTHFR (HMM E-Value=2.10195e-44)             29   2.4  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)                   27   9.6  

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score =  170 bits (414), Expect = 5e-43
 Identities = 79/126 (62%), Positives = 95/126 (75%), Gaps = 4/126 (3%)
 Frame = +1

Query: 163  GMVKSIHGTYKVKYRPDGPS----GEEVEIDFTPPFARVPMIASLEKILNVKLPSPDTLD 330
            GMVK+I G YKV Y P+       G+   +DFTPPF R+ MI  LEK+L V+LPSP   +
Sbjct: 853  GMVKNITGGYKVTYHPEAVDADNLGKSWTVDFTPPFKRLRMIPELEKVLGVRLPSPQDFN 912

Query: 331  TAESNALLSQLCEKHEVECPPPRTTARLLDKLVGEFLEDKCINPTFILDHPQIMSPLSKY 510
            T E+N LL QLC KHEV+C PPRTTARLLDKLVGEFLE +C++PTFI+DHP+IMSPLSK+
Sbjct: 913  TPEANKLLDQLCVKHEVDCAPPRTTARLLDKLVGEFLESQCVSPTFIIDHPEIMSPLSKW 972

Query: 511  HRDIPG 528
            HR   G
Sbjct: 973  HRKEKG 978



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 37/48 (77%), Positives = 40/48 (83%)
 Frame = +2

Query: 2   LVVGGLDRVMKSEDSSRNEGIDLTHNPEFTTCEFYMAYADYNDLITIT 145
           LVVGG+DRV +     RNE IDLTHNPEFTTCEFYMAYADYNDL+ IT
Sbjct: 800 LVVGGIDRVYEIGRQFRNESIDLTHNPEFTTCEFYMAYADYNDLMEIT 847


>SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = +2

Query: 41  DSSRNEGIDLTHNPEFTTCEFYMAYADYNDLITIT 145
           DS  + GI + HNPEFT  E YMAYADY+DLI +T
Sbjct: 79  DSRGSPGISVRHNPEFTMMELYMAYADYHDLIELT 113


>SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)
          Length = 735

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 214 GPSGEEVEIDFTPPFARVPMIASLEKILNVKLPSPDTLDTAESNAL-LSQLCEKHEVECP 390
           GP  E V +  +P F      A L+  L V       L T ++ A  L+Q+ ++HE  CP
Sbjct: 141 GPLKEYVVLQSSPDFETAETQARLQAQLAVDGKVVYLLKTVDTMATKLNQVTKRHEKNCP 200

Query: 391 PPRTTARLLDKLVGEFL 441
                + + D + G+ L
Sbjct: 201 GYLCLSEVRDTVAGKTL 217


>SB_16695| Best HMM Match : MTHFR (HMM E-Value=2.10195e-44)
          Length = 543

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +1

Query: 286 EKILNVKLPSPDTLDTAESNALLSQLCEKHEVECPPPRTTARLLDKLVGEFLEDKCINPT 465
           E+  +V++  P T + A S  L   +C  +E+E   P   A +  K   E + DKC+ PT
Sbjct: 28  ERFFSVEIFPPKTFNGATS--LFGIMCRLNELEDTKP-LFADITWKPSKEPMSDKCLEPT 84

Query: 466 FIL 474
            +L
Sbjct: 85  TLL 87


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 455 MHLSSRNSPTNLSRSRAVVLGGGHSTSCFSHNWLRRAFDSAVSS 324
           MH SS  SP  +S +  + + GG      SH  +R   D A++S
Sbjct: 752 MHTSSTLSPCKMSSTSGLRIAGGPQLPPVSHPGIRHYQDRALTS 795


>SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 476 SRINVGLMHLSSRNSPTNLSRSRAVVLGGGHSTSCF---SHNWLRRAFDS 336
           SRI   ++H S+R   T   R  ++VL  GH+   F   SH  LRRA ++
Sbjct: 432 SRIIQFIIHNSTRRIETAEKRIDSLVLSAGHARITFPSSSHVSLRRAHET 481


>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
          Length = 448

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 193 KVKYRPDGPSGEEVEIDFTPPFARVPMIASLEKILNV 303
           +V + P  P  + VE+ F PP  +   +  + K++ V
Sbjct: 367 EVTFHPSNPKCDSVEVHFHPPNPKCDSVEVMTKMIRV 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,169,644
Number of Sequences: 59808
Number of extensions: 347766
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)