Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F15
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                126   1e-29
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           34   0.10 
SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)                    31   0.97 
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.2  
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)                28   5.2  
SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    28   5.2  
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)           28   6.9  
SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)                 28   6.9  
SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)              28   6.9  
SB_26806| Best HMM Match : Annexin (HMM E-Value=0)                     28   6.9  
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)                  27   9.1  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  126 bits (304), Expect = 1e-29
 Identities = 51/74 (68%), Positives = 64/74 (86%)
 Frame = -3

Query: 610 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVP 431
           +NHPG+I  GY+PVLDCHTAHIACKF ++ EK+DRR+GK  EDNPK  K+GDAA+V ++P
Sbjct: 206 MNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIP 265

Query: 430 SKPLCVESFQEFPP 389
           SKP+CVE+F EFPP
Sbjct: 266 SKPMCVETFTEFPP 279



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/23 (86%), Positives = 23/23 (100%)
 Frame = -1

Query: 390 PLGRFAVRDMRQTVAVGVIKAVN 322
           PLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 279 PLGRFAVRDMKQTVAVGVIKSVD 301


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 514 VDRRTGKSTEDNPKSSKSGDAAIVNLVPSKPLCVESFQEF 395
           +D++TGK  +  P+  K    AI  L     +C+E F +F
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDF 535


>SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)
          Length = 918

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +1

Query: 337 YTDGDRLPHVTHGETTEGVGIPGRTPHTGAWR--EPG*QWR 453
           + DG  L     G    GV +  R P  G WR  +PG +WR
Sbjct: 548 HADGAHLIQYKDGAVPSGVKLVERNPRYGEWRHKKPGYEWR 588


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 549  T*PANLPKSKRKSTVVLVNQQRTTLNPVNLVMPP 448
            T PA  P + RK+T     Q RTT  P     PP
Sbjct: 1459 TVPATKPPTTRKTTTATTTQGRTTRKPTTTAEPP 1492


>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 577 TPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVPSKPLCVE 410
           TPVL   TAH+  K   ++  +         D P + KS   ++VN V S  L  E
Sbjct: 223 TPVLRIKTAHVTDKDNRVRSVLIIDNISQAPDTPATLKSSSDSVVNSVGSVGLVAE 278


>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 717

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = -2

Query: 449 HCQPGSLQAPVCGVLPGIPTPSVVSPCVT*GRRSPSV**RL*TSRKQVVAKSPKLPKKPP 270
           H  P  L  PVC V+ GIP+P   S     G R P +  +  T R  V ++ P++P++  
Sbjct: 135 HAGPPGL-TPVCSVVNGIPSPIPRSVNQAFGSRVPPL--KSPTERGPVYSR-PEVPQQRG 190

Query: 269 RARSS*HC*QLSFI 228
            + +S H   L F+
Sbjct: 191 PSMASPHPYTLPFV 204


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 504 VLVNQQRTTLNPVNLVMPPLSTWFPPSPCVWSPSRNSHP 388
           + + +Q  +  P     PP   ++PP+P  + P++ S+P
Sbjct: 163 LFILRQHPSYPPTQPFYPPTQPFYPPTPSSYPPTQPSYP 201


>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 496 KSTEDNPKSSKSGDAAIVNLVPSKPLCVESFQEFPP 389
           KST+DN  S  S   A    V SK + V S +E PP
Sbjct: 57  KSTKDNGNSKGSSSRASERGVGSKQVSVSSLKEAPP 92


>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
          Length = 503

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 292 QSCRKSHQGQEVASTVNSSVLYTTAILHSPKGVQKERRATN 170
           +S +KS +    A T+NS+ +YT  +   P+ V  +   TN
Sbjct: 238 KSAKKSKKSDATAPTINSTGIYTQLVDLLPRNVVLDDEVTN 278


>SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -3

Query: 439  LVPSKPLCVESFQEFPPPRSFRRA*HEADGR-RRCNKGCELQGSRWWQSH-QSCRKSHQG 266
            L P+  L +++    PPP SF+R       R RR     EL  SRW + + Q+ +K H+ 
Sbjct: 950  LTPNNILTIKTKLVMPPPGSFQRPELYLRKRWRRVQYLTELFWSRWKKEYLQNLQKRHKW 1009

Query: 265  QEVASTVNSSVLYTTAILHSPKG 197
             +    +    +   A   +P+G
Sbjct: 1010 CDTKRNIAVGDIVLLADDDTPRG 1032


>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -2

Query: 605 SPRSNIKRIHTCIGLPHSPHSLQICR 528
           SP+   KR  T  GLP S HSL  CR
Sbjct: 537 SPKMKKKRPKTGEGLPGSKHSLDSCR 562


>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
          Length = 597

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +1

Query: 388 GVGIPGRTPHTGAWR--EPG*QWR 453
           GV + GR P  G WR   PG +WR
Sbjct: 26  GVKLVGRNPRYGEWRHKRPGYEWR 49


>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
          Length = 715

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 268 GQEVASTVNSSVLYTTAILHSPKGVQKERRATN 170
           G+ V +T+N + L+++ I HSP   Q   RA+N
Sbjct: 97  GESVHTTLNDTPLHSSVIDHSPMYPQDTIRASN 129


>SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)
          Length = 171

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 505 RTGKSTEDNPKSSKSGDAA-----IVNLVPSKPLCVESFQEFP 392
           R GK+  D+ K  KS         +V++  +KPL  E+ + FP
Sbjct: 123 REGKNNNDSAKKGKSAQITGVHPQLVDMASNKPLIKETMEHFP 165


>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 829

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 565 DCHTAHIACKFAE-IKEKVDRRTGKSTEDNPKSSKSGD 455
           D  T + A K  + IKE+  ++ G S ED+ K   SGD
Sbjct: 77  DARTLYFAMKNIDSIKEEYQKKYGCSLEDDVKEETSGD 114



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 529 EIKEKVDRRTGKSTEDNPKSSKSGD 455
           EIK++ +++ G+S  D+ KS  SGD
Sbjct: 549 EIKQEYNKKYGRSLTDDMKSETSGD 573


>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
          Length = 577

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 496 KSTEDNPK--SSKSGDAAIVNLVPSKPLCVESFQEFPPP 386
           KSTE N K  SS  GD++I NL+P +P   +     P P
Sbjct: 387 KSTERNEKIDSSMEGDSSIQNLLP-EPADGDDLSAVPQP 424


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,111,134
Number of Sequences: 59808
Number of extensions: 441608
Number of successful extensions: 1577
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)