Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F15
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 112 2e-25
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 112 2e-25
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 112 2e-25
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 112 2e-25
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 103 9e-23
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 44 6e-05
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 35 0.049
At4g27900.2 68417.m04005 expressed protein 32 0.26
At4g27900.1 68417.m04004 expressed protein 32 0.26
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 29 1.8
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ... 29 2.4
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce... 29 3.2
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 29 3.2
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 29 3.2
At1g45160.1 68414.m05177 protein kinase family protein contains ... 29 3.2
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ... 28 5.6
At4g20940.1 68417.m03034 leucine-rich repeat family protein cont... 28 5.6
At1g62560.1 68414.m07058 flavin-containing monooxygenase family ... 28 5.6
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 28 5.6
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 27 7.4
At5g53770.1 68418.m06681 nucleotidyltransferase family protein c... 27 9.8
At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containi... 27 9.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 112 bits (269), Expect = 2e-25
Identities = 46/74 (62%), Positives = 58/74 (78%)
Frame = -3
Query: 610 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVP 431
+NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK K+GDA +V + P
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTP 394
Query: 430 SKPLCVESFQEFPP 389
+KP+ VE+F E+PP
Sbjct: 395 TKPMVVETFSEYPP 408
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -1
Query: 432 PPSPCVWSPSRNSHPLGRFAVRDMRQTVAVGVIKAVN 322
P P V PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 394 PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 112 bits (269), Expect = 2e-25
Identities = 46/74 (62%), Positives = 58/74 (78%)
Frame = -3
Query: 610 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVP 431
+NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK K+GDA +V + P
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTP 394
Query: 430 SKPLCVESFQEFPP 389
+KP+ VE+F E+PP
Sbjct: 395 TKPMVVETFSEYPP 408
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -1
Query: 432 PPSPCVWSPSRNSHPLGRFAVRDMRQTVAVGVIKAVN 322
P P V PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 394 PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 112 bits (269), Expect = 2e-25
Identities = 46/74 (62%), Positives = 58/74 (78%)
Frame = -3
Query: 610 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVP 431
+NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK K+GDA +V + P
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTP 394
Query: 430 SKPLCVESFQEFPP 389
+KP+ VE+F E+PP
Sbjct: 395 TKPMVVETFSEYPP 408
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -1
Query: 432 PPSPCVWSPSRNSHPLGRFAVRDMRQTVAVGVIKAVN 322
P P V PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 394 PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 112 bits (269), Expect = 2e-25
Identities = 46/74 (62%), Positives = 58/74 (78%)
Frame = -3
Query: 610 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVP 431
+NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E PK K+GDA +V + P
Sbjct: 335 MNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTP 394
Query: 430 SKPLCVESFQEFPP 389
+KP+ VE+F E+PP
Sbjct: 395 TKPMVVETFSEYPP 408
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -1
Query: 432 PPSPCVWSPSRNSHPLGRFAVRDMRQTVAVGVIKAVN 322
P P V PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 394 PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 103 bits (247), Expect = 9e-23
Identities = 43/74 (58%), Positives = 56/74 (75%)
Frame = -3
Query: 610 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVP 431
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 430 SKPLCVESFQEFPP 389
+KP+ VE++ +PP
Sbjct: 61 TKPMVVEAYSAYPP 74
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = -1
Query: 432 PPSPCVWSPSRNSHPLGRFAVRDMRQTVAVGVIKAV 325
P P V PLGRFA+RDMRQTV VGVIK+V
Sbjct: 60 PTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -3
Query: 583 GYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVPSKPLCVESF 404
GY +L H C+ E+K ++D +T K + K+G A + + + +C+E F
Sbjct: 440 GYKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKF 499
Query: 403 QEFP 392
+FP
Sbjct: 500 SDFP 503
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 34.7 bits (76), Expect = 0.049
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = -3
Query: 559 HTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVPSKPLCVESFQE 398
H A A ++ +D +TG+ T+ +P+ + +A++ + P+CVE+F E
Sbjct: 586 HHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSE 639
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 478 PKSSKSGDAAIVNLVPSKPLCVESFQEFPP-PRSFRRA*HEAD 353
PKS SG+ + +++V K ++ F +FPP RRA E+D
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPVDYGMRRAFSESD 186
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 478 PKSSKSGDAAIVNLVPSKPLCVESFQEFPP-PRSFRRA*HEAD 353
PKS SG+ + +++V K ++ F +FPP RRA E+D
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPVDYGMRRAFSESD 186
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to
cDNA DNA ligase IV, GI:9651814
Length = 1219
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Frame = -3
Query: 508 RRTGKSTEDNP---KSSKSGDAAIVNLVPSK 425
++ +ST+DNP KSSK G+ V+LVPS+
Sbjct: 610 QKESESTQDNPKVNKSSKRGEKKNVSLVPSQ 640
>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase GB:AAA21178 GI:349534
from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
Mus musculus; contains Pfam profile PF00743
Flavin-binding monooxygenase-like
Length = 457
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 507 VVLVNQQRTTLNPVNLVMPPLSTWFPPSPCVWSPSRNSHPLGR 379
V V +R TL + +M +S W+ V P R +H LG+
Sbjct: 344 VAAVLSRRVTLPTEDKMMEDISAWYASLDAVGIPKRYTHKLGK 386
>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
tryoni membrane transporter (white) gene, PID:g3676298
Length = 577
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -3
Query: 259 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYIFYMAYTVTLFLIYIRLY--IHLKC 86
+A T + ++L L S + KE +LF F+ Y L + I Y +H KC
Sbjct: 458 IAGTSSVTILLAAFFLFSGYFISKES-LPKYWLFMYFFSMYKYALDALLINEYSCLHNKC 516
Query: 85 FVITAN*SVNS 53
V SVNS
Sbjct: 517 LVWFEEASVNS 527
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 496 KSTEDNPKSSKSGDAAIVNLVPSKPLCVESFQEFPP 389
K+++ +P S GD+ IV P KPL + S ++ PP
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPP 480
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 532 QICRLCGLCGNPIQVCIRLIFD 597
++CR+CGL PI+ I ++F+
Sbjct: 197 EVCRVCGLIKKPIESMIEVVFN 218
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = -3
Query: 580 YTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVPSKPLCVESFQ 401
Y P CH AC E++ R S +D K K + N SK + ++SF
Sbjct: 82 YKPKYSCHPPKYACSSTTSSEEIKLRGKNSGKDEEKMIKISE---TNPPCSKSMGIKSFS 138
Query: 400 EFPPPR 383
PR
Sbjct: 139 HELGPR 144
>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 556
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -2
Query: 233 FIYNCD---TSFTERCSEGKKGYKLIPFLYFLHGLYCNIIFNLYKVIHTPQMFCYNCKLK 63
+ Y+CD ++ C GK Y + P FL C+ F + HT + FC C L+
Sbjct: 465 WFYSCDKCCSTLHIDCVLGKSPY-MRPGHSFL---LCSREFQVVSNNHTSRPFCTICSLR 520
Query: 62 CK 57
CK
Sbjct: 521 CK 522
>At4g20940.1 68417.m03034 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
gi|14495542|gb|AAB36558
Length = 977
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 371 TAKRPRGWEFLEGLHTQGLGGNQVD 445
T K PRG+E + L L GN +D
Sbjct: 187 TGKMPRGFELISSLEVLDLHGNSID 211
>At1g62560.1 68414.m07058 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase GB:AAA21178 GI:349534
SP|P32417 from [Oryctolagus cuniculus]; contains Pfam
profile PF00743 Flavin-binding monooxygenase-like
Length = 462
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -1
Query: 507 VVLVNQQRTTLNPVNLVMPPLSTWFPPSPCVWSPSRNSHPLGR 379
V V R TL + +M ++ W+ + P R++H +GR
Sbjct: 345 VAAVLSGRVTLPSTDKMMEDINAWYASLDALGIPKRHTHTIGR 387
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +2
Query: 245 NSASYFLPLVAFSAALVTLP---PPASLKFTAFITPTATVCLMSRTAKRPRGWEFLEGLH 415
+S+S+ PL++ S++ T P PA++ T I P+ + + T R R G
Sbjct: 110 SSSSHSQPLLSSSSSSATSPAPTSPANVLPTGNICPSGKIQITGMTQSRSRSDVLGSGTG 169
Query: 416 TQGLGGNQVDNGGIT 460
T G G+ + GGI+
Sbjct: 170 TYG-HGSIMRGGGIS 183
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -2
Query: 236 SFIYNCD---TSFTERCSEGKKGYKLIPFLYFLHGLYCNIIFNLYKVIHTPQMFCYNCKL 66
++ Y+CD + C G+ Y L P F GLY + + + ++FCY C+L
Sbjct: 557 TWFYSCDFCKITLHVNCLLGEDIY-LKPCHIFKVGLYYKEV-EIARNDGNSRLFCYTCEL 614
Query: 65 KC 60
+C
Sbjct: 615 RC 616
>At5g53770.1 68418.m06681 nucleotidyltransferase family protein
contains Pfam domains PF03828: PAP/25A associated
domain, PF01909: Nucleotidyltransferase domain
Length = 530
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 538 KFAEIKEKVDRRTGKSTEDNPKSSKSGDAAIVNLVPSKPLCV 413
KF E K + E+ PK+++ A+ L P +PLC+
Sbjct: 223 KFVEKKSNIAFDLSFDMENGPKAAEFIQDAVSKLPPLRPLCL 264
>At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 903
Score = 27.1 bits (57), Expect = 9.8
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +3
Query: 366 HARRNDRGGGNSWKDSTHR 422
H +++++ GGN+W++ HR
Sbjct: 815 HQKKHNKNGGNNWQNILHR 833
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,869,692
Number of Sequences: 28952
Number of extensions: 307305
Number of successful extensions: 950
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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