Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F14
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...   179   3e-46
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    28   0.93 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   4.9  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.5  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    25   6.5  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   8.6  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   8.6  

>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score =  179 bits (435), Expect = 3e-46
 Identities = 87/187 (46%), Positives = 122/187 (65%)
 Frame = +1

Query: 4   RVVIFSQYPQYSCATTGSSLNAVADYYKNKQIPRDIRFSLIERWGSHPLLARVFAERIKE 183
           R V FSQYPQ+SCAT+G+SLN +      K + +D  +S+++RW     L   FAE I+E
Sbjct: 149 RAVAFSQYPQWSCATSGASLNELRRKLIEKGMEKDFEWSIVDRWPLQQGLINAFAENIEE 208

Query: 184 KLTLFPAGVRDQVLILFTAHSLPLKAVSRGDTYPHEVAASVSATVSELGAVNPHRLVWQS 363
            L  +P  VRD V+I+F+AHSLP+  V++GD Y +E+AA+  A +  L   N     WQS
Sbjct: 209 TLKTYPEDVRDDVVIVFSAHSLPMSQVAKGDPYVYEIAATSQAVMKRLNYKNKFVNAWQS 268

Query: 364 KVGPLPWLQPYTDDAIKSYAKQGVKYMILVPIAFVNEHIETLHELDIEYCDEVAKEAGIV 543
           KVGPLPW+ P TD  I+    +G K MILVPIAF ++HIETL EL+ +Y ++ AK+ GI 
Sbjct: 269 KVGPLPWMSPATDFVIEQLGNRGQKNMILVPIAFTSDHIETLKELE-DYIED-AKQKGIT 326

Query: 544 QIERAET 564
            ++R  +
Sbjct: 327 GVKRVSS 333


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 312 GGY*CSHFMWVCVTSRHSLQREAVCSEEYQNLISY 208
           G Y  S     CV    SLQ+  +C+ +Y NL+ Y
Sbjct: 288 GWYQISKIGAQCVFWERSLQKANICNPDYPNLLEY 322


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 109 IRFSLIERWGSHPLLARVFAERIKEKLTLFPAGVRDQ 219
           I+ SL+  W    +LA++ +   KE+L LFP  V  Q
Sbjct: 466 IQKSLLVNWLLELMLAKLNSLDEKERLELFPENVMQQ 502


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 217 QVLILFTAHSLPLKAVSRGDTYPHEVAASVSATVSELGAVNPHRL 351
           Q  +L T H  P    SRG T   +   S+ A    + +V P+ L
Sbjct: 458 QYNLLSTVHDTPYTWCSRGPTLDGDTGVSIYAPGGAITSVPPYSL 502


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 262  VSRGDTYPHEVAASVSATVSELGAVNPHRLVWQSKV 369
            ++R  T    V ASV   +S++G V+P  LV+   V
Sbjct: 1742 IARIHTSSSSVRASVHQLLSDIGRVHPQALVYSLTV 1777


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 317 TVADTDAATSCGYVSPLDTAFRG 249
           T+   D A  CG    LDT F+G
Sbjct: 133 TILSADCAEKCGLTRLLDTRFQG 155


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 377 RGPTFDCQTSLWGFTAPSSLTVADTDAATSCGYVSPLDTA 258
           +G  F CQ S+   +A SS  ++ T +ATS    S   +A
Sbjct: 337 KGDDFTCQGSVATISATSSYDLSSTVSATSGSATSATGSA 376


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 441  YDSGPDSVCQRTHRDITRTGHRIL 512
            YD G   V  R  +D+   GHR+L
Sbjct: 988  YDCGKLQVLDRLLKDLVSNGHRVL 1011


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,155
Number of Sequences: 5004
Number of extensions: 65789
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)