Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F14
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)             233   6e-62
SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                31   0.97 
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)       31   0.97 
SB_28727| Best HMM Match : LISCH7 (HMM E-Value=3.6)                    29   2.2  
SB_54323| Best HMM Match : LISCH7 (HMM E-Value=3.6)                    29   2.2  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  

>SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score =  233 bits (571), Expect = 6e-62
 Identities = 106/188 (56%), Positives = 138/188 (73%)
 Frame = +1

Query: 1   ERVVIFSQYPQYSCATTGSSLNAVADYYKNKQIPRDIRFSLIERWGSHPLLARVFAERIK 180
           ER + F+QYPQYSC+TTGSS+NA+  YYK +Q    +++S I+RW +HP L + FA+ +K
Sbjct: 357 ERAIAFTQYPQYSCSTTGSSINAIYKYYKQRQGNSSLKWSAIDRWPTHPGLIKAFADNVK 416

Query: 181 EKLTLFPAGVRDQVLILFTAHSLPLKAVSRGDTYPHEVAASVSATVSELGAVNPHRLVWQ 360
            +L+ FP  V+  V+ILF+AHSLP+K V RGD YP EVAA+V   +  L   + +RLVWQ
Sbjct: 417 VELSKFPEEVQKDVVILFSAHSLPMKVVDRGDPYPQEVAATVQRVMEALDFSHSYRLVWQ 476

Query: 361 SKVGPLPWLQPYTDDAIKSYAKQGVKYMILVPIAFVNEHIETLHELDIEYCDEVAKEAGI 540
           SKVGPLPWL P T+DAIK  AK   K ++LVPIAF ++HIETLHELDIEY  E+A E G+
Sbjct: 477 SKVGPLPWLGPQTEDAIKGLAKNNKKNLLLVPIAFTSDHIETLHELDIEYAQELAHEVGV 536

Query: 541 VQIERAET 564
             I RAE+
Sbjct: 537 ENIRRAES 544


>SB_19678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 356 GNRRWDLCRGCSPTPTMPSSHTQ 424
           G RR  L RGC+P P+MP++  Q
Sbjct: 751 GQRRRTLPRGCNPEPSMPNNRVQ 773


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 333  RSQLANSGGY*CSHFMWVCVTSRHSLQREAVCSEE 229
            RS   N  G  C  F + C   RH +QR+ +C  E
Sbjct: 1076 RSDERNCTGKTCKPFEFACANGRHCIQRKWICDGE 1110


>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
          Length = 212

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 333 RSQLANSGGY*CSHFMWVCVTSRHSLQREAVCSEE 229
           RS   N  G  C  F + C   RH +QR+ +C  E
Sbjct: 103 RSDERNCTGKTCKPFEFACANGRHCIQRKWICDGE 137


>SB_28727| Best HMM Match : LISCH7 (HMM E-Value=3.6)
          Length = 102

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 592 RYEYGMSVRGFPPFLFVRFQPLWRLRRSIRCPVRVMSLCVR*QTLSG 452
           RY+    V     F  + + PL+RL  S+ C +RV + CV   T SG
Sbjct: 13  RYDISCDVLRDMSFFLLLYVPLYRLLYSLMCDIRV-TYCVTCLTSSG 58


>SB_54323| Best HMM Match : LISCH7 (HMM E-Value=3.6)
          Length = 165

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 592 RYEYGMSVRGFPPFLFVRFQPLWRLRRSIRCPVRVMSLCVR*QTLSG 452
           RY+    V     F  + + PL+RL  S+ C +RV + CV   T SG
Sbjct: 76  RYDISCDVLRDMSFFLLLYVPLYRLLYSLMCDIRV-TYCVTCLTSSG 121


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   RVVIFSQYPQYSCATTGSSLNA-VADYYKNKQIPRDIRFS 120
           + ++F+Q  QY   TTGS L   V D Y ++    D+R +
Sbjct: 87  KYLLFTQNTQYRTTTTGSGLFCIVRDNYASRNFYNDVRIA 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,627,200
Number of Sequences: 59808
Number of extensions: 547641
Number of successful extensions: 1590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)