Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F14
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical ...    33   0.16 
Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
 Frame = +1

Query: 118 SLIERWGSHPLLARVFAERIKEKLTLFPAGVRDQVLILFTAHSLPLKAVSRGDTYPHEVA 297
           S I RW +HP+LA  ++ +IKE L     GV       FT +  P             V 
Sbjct: 201 SAIWRWNNHPILADYWSSKIKEVLPKLD-GVVFAAPRKFTCNYGP-------------VF 246

Query: 298 ASVSATVSELGAVNPHRLVWQSKVG--PLPWLQPYTDDAIKSYAKQGVKYMILVPIAFVN 471
           AS   T+++LG + P RL + S      LP +Q       K         + +VPI  V 
Sbjct: 247 ASCERTMNQLGDLIPWRLGFYSSWDSFDLPSMQGVASQVQKIRKTSESGKVAVVPITDVI 306

Query: 472 EHIETLHEL 498
           E   TL+ L
Sbjct: 307 ETFNTLYTL 315


>AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
 Frame = +1

Query: 118 SLIERWGSHPLLARVFAERIKEKLTLFPAGVRDQVLILFTAHSLPLKAVSRGDTYPHEVA 297
           S I RW +HP+LA  ++ +IKE L     GV       FT +  P             V 
Sbjct: 201 SAIWRWNNHPILADYWSSKIKEVLPKLD-GVVFAAPRKFTCNYGP-------------VF 246

Query: 298 ASVSATVSELGAVNPHRLVWQSKVG--PLPWLQPYTDDAIKSYAKQGVKYMILVPIAFVN 471
           AS   T+++LG + P RL + S      LP +Q       K         + +VPI  V 
Sbjct: 247 ASCERTMNQLGDLIPWRLGFYSSWDSFDLPSMQGVASQVQKIRKTSESGKVAVVPITDVI 306

Query: 472 EHIETLHEL 498
           E   TL+ L
Sbjct: 307 ETFNTLYTL 315


>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 440 YFTPCFAYDLMASSV*GCSHGRGPTFDCQT 351
           YF PCF   ++ + V  C   + PT  C+T
Sbjct: 204 YFVPCFIITVVYTKVAKCLWCKDPTLQCET 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,038
Number of Sequences: 27780
Number of extensions: 394065
Number of successful extensions: 986
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)