Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F14
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26030.1 68418.m03097 ferrochelatase I identical to Swiss-Pro...   136   1e-32
At2g30390.1 68415.m03698 ferrochelatase II identical to Swiss-Pr...   128   2e-30
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C...    31   0.46 
At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ...    31   0.80 
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont...    27   7.4  
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont...    27   7.4  
At4g23580.1 68417.m03397 kelch repeat-containing F-box family pr...    27   7.4  
At3g01660.1 68416.m00097 expressed protein similar to putative p...    27   7.4  
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ...    27   7.4  
At1g62560.1 68414.m07058 flavin-containing monooxygenase family ...    27   7.4  
At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR ...    27   7.4  
At1g09810.1 68414.m01101 expressed protein contains Pfam profile...    27   7.4  
At4g37100.1 68417.m05255 hypothetical protein                          27   9.8  

>At5g26030.1 68418.m03097 ferrochelatase I identical to
           Swiss-Prot:P42043 ferrochelatase I,
           chloroplast/mitochondrial precursor (EC 4.99.1.1)
           (Protoheme ferro-lyase) (Heme synthetase) [Arabidopsis
           thaliana]
          Length = 466

 Score =  136 bits (329), Expect = 1e-32
 Identities = 68/183 (37%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
 Frame = +1

Query: 4   RVVIFSQYPQYSCATTGSSLNAVADYYKNKQIPRDIRFSLIERWGSHPLLARVFAERIKE 183
           R+V+   YPQYS +TTGSS+  + D ++       +  ++I+ W          A+ I++
Sbjct: 207 RLVVLPLYPQYSISTTGSSIRVLQDLFRKDPYLAGVPVAIIKSWYQRRGYVNSMADLIEK 266

Query: 184 KLTLFPAGVRDQVLILFTAHSLPLKAVSR-GDTYPHEVAASVSATVSEL---GAVNPHRL 351
           +L  F      +V+I F+AH +P+  V   GD Y  ++   +   + EL   G +N H+L
Sbjct: 267 ELQTFSDP--KEVMIFFSAHGVPVSYVENAGDPYQKQMEECIDLIMEELKARGVLNDHKL 324

Query: 352 VWQSKVGPLPWLQPYTDDAIKSYAKQGVKYMILVPIAFVNEHIETLHELDIEYCDEVAKE 531
            +QS+VGP+ WL+PYTD+ +    K GVK ++ VP++FV+EHIETL E+D+EY  E+A E
Sbjct: 325 AYQSRVGPVQWLKPYTDEVLVDLGKSGVKSLLAVPVSFVSEHIETLEEIDMEY-RELALE 383

Query: 532 AGI 540
           +G+
Sbjct: 384 SGV 386


>At2g30390.1 68415.m03698 ferrochelatase II identical to
           Swiss-Prot:O04921 ferrochelatase II, chloroplast
           precursor (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme
           synthetase) [Arabidopsis thaliana]
          Length = 512

 Score =  128 bits (310), Expect = 2e-30
 Identities = 69/183 (37%), Positives = 111/183 (60%), Gaps = 4/183 (2%)
 Frame = +1

Query: 4   RVVIFSQYPQYSCATTGSSLNAVADYYKNKQIPRDIRFSLIERWGSHPLLARVFAERIKE 183
           ++V+   YPQ+S +T+GSSL  +   ++  +   +++ ++I  W       +  A  I+ 
Sbjct: 218 KLVVLPLYPQFSISTSGSSLRLLERIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIQS 277

Query: 184 KLTLFPAGVRDQVLILFTAHSLPLKAVSR-GDTYPHEVAASVSATVSELGA---VNPHRL 351
           +L  F  G  +QV+I F+AH +PL  V   GD Y  E+   V   + EL      N + L
Sbjct: 278 ELGKF--GSPNQVVIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELDKRKITNAYTL 335

Query: 352 VWQSKVGPLPWLQPYTDDAIKSYAKQGVKYMILVPIAFVNEHIETLHELDIEYCDEVAKE 531
            +QS+VGP+ WL+PYT++AI    K+GV+ ++ VPI+FV+EHIETL E+D+EY  E+A +
Sbjct: 336 AYQSRVGPVEWLKPYTEEAITELGKKGVENLLAVPISFVSEHIETLEEIDVEY-KELALK 394

Query: 532 AGI 540
           +GI
Sbjct: 395 SGI 397


>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
           Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
           profile PF00888: Cullin family
          Length = 792

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 388 QPYTDDAIKSYAKQGVKYMILVPIAFVNEHIE-TLHELD---IEYCDEVAKEAGIVQIER 555
           +P+ +   + YA +G+KYM    +    +H+E  LHE +   I Y D V ++  I  +ER
Sbjct: 266 KPFLEGTSEFYAAEGMKYMQQSDVPEYLKHVEGRLHEENERCILYIDAVTRKPLITTVER 325

Query: 556 AETPEH 573
                H
Sbjct: 326 QLLERH 331


>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 403 DAIKSYAKQGVKY-MILVPIAFVNEHIE--TLHELDIEYCDEVAKEAGIVQIERAETPEH 573
           D  +SY ++ V+  M++V  +++   IE   +H++  E C   AKE   +++ +  T   
Sbjct: 460 DTGESYLEELVRRNMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFIRVVKVPTTTS 519

Query: 574 SSHIHSGACRRRR 612
           ++      CR RR
Sbjct: 520 TTINAQSPCRSRR 532


>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 408 HQVIRKTRGEIYD---SGPDSVCQRTHRDITRTGHRILRRSRQRGWNRTNR 551
           H  I++ R + Y+   +GPD   +R  R   R  +R  +R    GW+   R
Sbjct: 493 HDAIQRRRPDTYEEVSTGPDRFARRDDRSGMRMRNRSPQRGYFSGWDSKRR 543


>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 408 HQVIRKTRGEIYD---SGPDSVCQRTHRDITRTGHRILRRSRQRGWNRTNR 551
           H  I++ R + Y+   +GPD   +R  R   R  +R  +R    GW+   R
Sbjct: 493 HDAIQRRRPDTYEEVSTGPDRFARRDDRSGMRMRNRSPQRGYFSGWDSKRR 543


>At4g23580.1 68417.m03397 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 383

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 359 NRRWDLCRGCSPTPTMPSSHTQNK 430
           NR W + +G    P++P+SH+  K
Sbjct: 290 NRAWTILKGLGRLPSLPTSHSNVK 313


>At3g01660.1 68416.m00097 expressed protein similar to putative
           protein GB:CAB45319 [Arabidopsis thaliana]
          Length = 273

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 16  FSQYPQYSCATTGSSLNAVADYYKNKQIPRDIRFSLIERWGSH 144
           F  YP++      S ++++ + Y+N+  P      L+  W SH
Sbjct: 66  FYSYPRFVNHVDDSFISSLTELYRNRLRPGSTVLDLMSSWVSH 108


>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative similar to
           3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
           [Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
           GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
           contains InterPro accession IPR002155: Thiolase
          Length = 462

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223 LILFTAHSLPLKAVSRG---DTYPHEVAASVSATVSELGAVNP 342
           +++  AH  PL    RG   DTYP ++ A V   + E   +NP
Sbjct: 52  VVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNP 94


>At1g62560.1 68414.m07058 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           SP|P32417 from [Oryctolagus cuniculus]; contains Pfam
           profile PF00743 Flavin-binding monooxygenase-like
          Length = 462

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 439 YMILVPIAFVNEHIETLHELDIEYCDEVAKEAGIVQIER 555
           Y  L  +     H  T+  +  EY + VAKE+G   +ER
Sbjct: 369 YASLDALGIPKRHTHTIGRIQSEYLNWVAKESGCELVER 407


>At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +1

Query: 487 LHELDIEYCDEVAKEAGIVQIERAETPEHSSHIHSGACRRRR 612
           LH+L  E C   AKE   +QI     P  SS +HS A  R R
Sbjct: 490 LHDLMREICLLKAKEENFLQI--VTDPTSSSSVHSLASSRSR 529


>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 428

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 491 TNWTSNTATKSPKRLESYK*KGRKPPNT 574
           +N  S T+  +PK L ++   GR PPNT
Sbjct: 51  SNCLSQTSFSAPKPLGNFNGAGRLPPNT 78


>At4g37100.1 68417.m05255 hypothetical protein
          Length = 896

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 186 TYTVPSRCKRSSSDTLHCTQPPSEGC 263
           T + PSR +RSSS+ LH  +   E C
Sbjct: 576 TNSTPSRNRRSSSNHLHVQEIQEENC 601


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,517,291
Number of Sequences: 28952
Number of extensions: 372819
Number of successful extensions: 887
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)