Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F12
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   2.8  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   4.9  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   6.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    24   8.6  

>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 301 SKKKTVTFRIPDVLILINPQRSS 233
           SK ++VTF  PD+ IL +P  +S
Sbjct: 293 SKHRSVTFSPPDLAILFDPSITS 315


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 302 IQKKNCHFPNS*CTYTDQ 249
           ++KK+C  PNS  T TDQ
Sbjct: 198 LEKKSCLLPNSSGTLTDQ 215


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 291 FFLDLFCTGELRSDLEPNIILFI 359
           F +D FCTG   S ++  I LFI
Sbjct: 157 FCIDHFCTGPSDSRIQEKIRLFI 179


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 244 QRSSYE*DITKKNIFTCICYM 182
           + S YE D+  KNIF C+C +
Sbjct: 578 ESSKYETDL--KNIFDCLCLL 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,614
Number of Sequences: 5004
Number of extensions: 25851
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)