Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F12
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364...    28   2.6  
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473...    27   4.6  

>04_04_1004 +
           30035704-30035934,30036030-30036287,30036382-30036479,
           30036574-30037137,30037232-30037484,30037576-30037758,
           30037839-30038465
          Length = 737

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 182 HVTYASKNVFFGYILFIRTSLWVDQYKYIRNSESDS--FFFGFILY 313
           +  + S    F Y++F R   W  +Y Y+ ++  D+     G ++Y
Sbjct: 650 YTAWCSVGAVFNYLVFRRRKAWWQRYNYVLSAAMDAGVAIMGVLIY 695


>11_01_0595 +
           4732330-4732723,4732839-4732903,4733023-4733143,
           4733596-4733687,4733850-4733915,4734106-4734125,
           4734147-4734239,4734358-4734445,4734570-4734635,
           4734728-4734843,4735410-4735500,4736133-4736234,
           4736342-4736425,4736551-4736643,4736728-4736823,
           4736914-4736999,4737528-4737606,4737675-4737788,
           4737890-4737985,4738060-4738123,4738221-4738510,
           4738901-4738956,4739060-4739177,4739287-4739367,
           4739683-4739762,4740001-4740055,4740142-4740211,
           4740279-4740468,4740567-4740690,4741055-4741129,
           4741217-4741390
          Length = 1112

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 173 YKCHVTYASKNVFFGYILF--IRTSLWVDQYKYIRNSES 283
           Y+C +TY + + F+G I F  I  +L    + Y+R++ S
Sbjct: 236 YRCDITYTNNSYFYGIIWFSKITHNLQELGFDYLRDNLS 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,337,616
Number of Sequences: 37544
Number of extensions: 130262
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)