Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F12
         (370 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97668-1|CAA66258.1|  815|Homo sapiens XLRP3 protein.                  30   2.7  
U57629-1|AAC50481.1|  815|Homo sapiens retinitis pigmentosa GTPa...    30   2.7  
AL606748-2|CAI95407.1|  815|Homo sapiens retinitis pigmentosa GT...    30   2.7  
AK223491-1|BAD97211.1|  815|Homo sapiens retinitis pigmentosa GT...    30   2.7  
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    30   2.7  
AJ318463-1|CAC86116.1|  815|Homo sapiens retinitis pigmentosa GT...    30   2.7  
AJ238395-1|CAB54002.1|  646|Homo sapiens RPGR protein protein.         30   2.7  

>X97668-1|CAA66258.1|  815|Homo sapiens XLRP3 protein.
          Length = 815

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 IKSIMLGSKSLRSSPVQNKSKKKTVTFRIPDVLILINPQRSSYE 227
           I S+    KSL+ SPVQ + K++T+     D  +  N     YE
Sbjct: 505 IMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDEYE 548


>U57629-1|AAC50481.1|  815|Homo sapiens retinitis pigmentosa GTPase
           regulator protein.
          Length = 815

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 IKSIMLGSKSLRSSPVQNKSKKKTVTFRIPDVLILINPQRSSYE 227
           I S+    KSL+ SPVQ + K++T+     D  +  N     YE
Sbjct: 505 IMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDEYE 548


>AL606748-2|CAI95407.1|  815|Homo sapiens retinitis pigmentosa
           GTPase regulator protein.
          Length = 815

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 IKSIMLGSKSLRSSPVQNKSKKKTVTFRIPDVLILINPQRSSYE 227
           I S+    KSL+ SPVQ + K++T+     D  +  N     YE
Sbjct: 505 IMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDEYE 548


>AK223491-1|BAD97211.1|  815|Homo sapiens retinitis pigmentosa
           GTPase regulator variant protein.
          Length = 815

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 IKSIMLGSKSLRSSPVQNKSKKKTVTFRIPDVLILINPQRSSYE 227
           I S+    KSL+ SPVQ + K++T+     D  +  N     YE
Sbjct: 505 IMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDEYE 548


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 50  VYTMKYSNKSLYAYARYNINC*CIRLRLKLLYIHIYMQ*YKYKCHVTYASKNVFFGYILF 229
           +Y   Y     Y Y   +I+  C+ + L  +Y H YM  + + C  TY    ++    + 
Sbjct: 53  MYVYTYIYVYTYTYVCVHIHI-CVHIYL-CMYTHTYMCAHIHMCVYTYIYVYIYTHIHIC 110

Query: 230 IRTSLWVDQYKYI 268
           +  +++V  Y YI
Sbjct: 111 VHINMYVSIYVYI 123


>AJ318463-1|CAC86116.1|  815|Homo sapiens retinitis pigmentosa
           GTPase regulator protein.
          Length = 815

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 IKSIMLGSKSLRSSPVQNKSKKKTVTFRIPDVLILINPQRSSYE 227
           I S+    KSL+ SPVQ + K++T+     D  +  N     YE
Sbjct: 505 IMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDEYE 548


>AJ238395-1|CAB54002.1|  646|Homo sapiens RPGR protein protein.
          Length = 646

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 358 IKSIMLGSKSLRSSPVQNKSKKKTVTFRIPDVLILINPQRSSYE 227
           I S+    KSL+ SPVQ + K++T+     D  +  N     YE
Sbjct: 505 IMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDEYE 548


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,379,949
Number of Sequences: 237096
Number of extensions: 839651
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)