Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F12
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    27   3.2  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    26   7.3  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    26   7.3  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    26   7.3  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    26   7.3  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 215 GYILFIRTSLWVDQYKYIRNSESDSF 292
           GYI+F  T LW     Y+ NS   SF
Sbjct: 593 GYIIFTLTMLWSGNNLYVMNSTLRSF 618


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 236 TSLWVDQYKYIRNSESDSFFFGFILY 313
           TS W+D+ KY+ +   + F   F+ +
Sbjct: 141 TSFWLDELKYLNDDIFECFIISFVFF 166


>Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical
           protein T26H2.6 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 206 VFFGYILFIRTSLWVDQYKYIRNSESDSFFFGF-ILY 313
           V  GY+L I ++ +V +Y  + N ++  +FFG+ +LY
Sbjct: 103 VSVGYVLLILSAQFVFRYFAMHNKKNLKYFFGWRLLY 139


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 47  CVYTMKYSNKSLYAYARYNINC*CIRLRLKLLYIHIY 157
           C Y +KY N +++      +N  C+   L   YI  Y
Sbjct: 647 CKYAVKYENDTIFCLQSSGMNNVCVENDLPNYYISTY 683


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 47  CVYTMKYSNKSLYAYARYNINC*CIRLRLKLLYIHIY 157
           C Y +KY N +++      +N  C+   L   YI  Y
Sbjct: 647 CKYAVKYENDTIFCLQSSGMNNVCVENDLPNYYISTY 683


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 47  CVYTMKYSNKSLYAYARYNINC*CIRLRLKLLYIHIY 157
           C Y +KY N +++      +N  C+   L   YI  Y
Sbjct: 698 CKYAVKYENDTIFCLQSSGMNNVCVENDLPNYYISTY 734


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 182 HVTYASKNVFFG--YILFIRTSLWVDQYKYIRNSES 283
           H+ Y   + +F   +  F++ S  V++YKY+RN +S
Sbjct: 269 HIFYQMLSNYFDNPHKSFLKLSKKVNEYKYLRNDDS 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,902,535
Number of Sequences: 27780
Number of extensions: 139879
Number of successful extensions: 300
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)