Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F12
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   3.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   4.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   8.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   8.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   8.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   8.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   8.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   8.1  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 47  CVYTMKYSNKSLYAYARYNIN 109
           C Y+  Y N + Y    YNIN
Sbjct: 311 CNYSNNYYNNNNYKKLYYNIN 331


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 98  IWRRRTTIYSNTS*YIHIQRSSVSVILSH 12
           +WR  T +Y+N          + +VI+SH
Sbjct: 87  VWRPDTILYNNADPQYSSAVINTNVIVSH 115


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 351 VLCWVLSHYEVRRYKIN 301
           ++C   +HY +R +K N
Sbjct: 14  IVCQAKAHYSLRDFKAN 30


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +1

Query: 292 FFWIYFVPANFVV 330
           F W Y +P  F++
Sbjct: 225 FIWAYVIPLIFII 237


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 298 WIYFVPANFVV 330
           W+YFVP   ++
Sbjct: 223 WVYFVPLFLII 233


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = +2

Query: 119 IRLRLKLLYIHIYMQ*YKYKCHVTYASKNVFFGY 220
           ++ R+  + +H +   Y+Y   V+   + V +G+
Sbjct: 357 VKRRISFILVHGFPLEYEYVLAVSNRIQKVIYGF 390


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +2

Query: 206 VFFGYILFIRTSLWVDQYKYIRNSESDSFFF 298
           +F+G I+F  T +  ++  Y +N      ++
Sbjct: 25  IFYGSIMFSMTQVNKEECDYYQNLNLGEIYY 55


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 298 WIYFVPANFVV 330
           W+YFVP   ++
Sbjct: 99  WVYFVPLFLII 109


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +1

Query: 292 FFWIYFVPANFVV 330
           F W Y +P  F++
Sbjct: 225 FIWAYVIPLIFII 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,325
Number of Sequences: 438
Number of extensions: 1944
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)