Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F12
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ...    28   1.7  
At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containi...    28   1.7  
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac...    27   5.2  
At1g09930.1 68414.m01117 oligopeptide transporter OPT family pro...    26   6.8  

>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
           Homo sapiens, EMBL:HSU81006
          Length = 627

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 116 CIRLRLKLLYIHIYMQ*YKYKCHVTYASKNVFFGYILFIRTSLWVDQYKYIRNSESDSFF 295
           C  + L L Y+H+ ++ YK+     +AS +V   YI     +  V   K +    S + +
Sbjct: 532 CAEVSLVLTYMHLCVEDYKWWWKSFFASGSVAI-YIFIYSINYLVFDLKSLSGPVSATLY 590

Query: 296 FGFILY 313
            G+ L+
Sbjct: 591 LGYSLF 596


>At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 634

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 130 AKADALTVNIVSGVGVQRFIRILHSIYTYNVLV 32
           AK     V I  G  +QR + I+H +YTYN+L+
Sbjct: 96  AKMKKFDVVISLGEKMQR-LEIVHGLYTYNILI 127


>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
           8 / ERF transcription factor 8 (ERF8) identical to ERF
           transcription factor 8 GI:10567108 from [Arabidopsis
           thaliana]
          Length = 185

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 115 LTVNIVSGVGVQRFIRILHSIYTYNVLVYP 26
           L +++  G   +R I ++H +Y YN+  YP
Sbjct: 115 LELSLGGGGACRRKIPLVHPVYYYNMATYP 144


>At1g09930.1 68414.m01117 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 734

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 206 VFFGYILFIRTSLWVDQYKYIRNSESDS--FFFGFILY 313
           V F Y +F     W  +Y Y+ ++  D+   F G +LY
Sbjct: 657 VIFNYFVFKYCKKWWQRYNYVLSAALDAGLAFMGVLLY 694


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,159,181
Number of Sequences: 28952
Number of extensions: 120440
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)