Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F11
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 31 0.79
02_01_0106 - 780984-781279,781355-781578,781684-781920,782023-78... 29 2.4
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 4.2
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 7.4
11_01_0104 - 781471-781888,781994-782101,782195-782511 27 9.7
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 27 9.7
05_04_0032 + 17363039-17363436,17363626-17363936,17364058-173641... 27 9.7
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 27 9.7
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 27 9.7
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 6 RKMLSYNQYNMDKYTYVPTALDMYTTCLRDPVF--WKIMKRVM 128
R+M+SY+ + TY+P +++ C+R+P F W++ +++M
Sbjct: 155 REMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVKEQIM 195
>02_01_0106 -
780984-781279,781355-781578,781684-781920,782023-782126
Length = 286
Score = 29.5 bits (63), Expect = 2.4
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 1/161 (0%)
Frame = +3
Query: 36 MDKYTYVPTALDMYTTCLRDPVFWKIMKRVMNSFVLFKNMLPSYTREELDFPGVKVERVV 215
+DK Y+ L + + P W I V NS+ + KN P T + + F + E V
Sbjct: 122 LDKKLYITGGLGLTD---KSPNSWDIYDPVTNSWCVHKN--PMLTPDIVKFVALDGELVT 176
Query: 216 SEKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD 395
K + + + LY+ + + K M++ + + + +SDK
Sbjct: 177 VHKAAWNRMYFAVVMDGTLYMLEQSLGTKL--MMWQKETKEW------IMLGRLSDKLTR 228
Query: 396 AVVRIF-IGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTG 515
+ IG K +GR +SI LD + D F+ TG
Sbjct: 229 PPCELVGIGRKIYIIGRGLSIVTIDLDTVRADGFLVSSSTG 269
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 217 LKRWSPLWMNMTWISRMHFTWTRLRCKRRSLI 312
+KRWS + + W+SR F R RRSLI
Sbjct: 98 VKRWSNHKIMVRWLSRFFFYLDRYFISRRSLI 129
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 18 SYNQYNMDKYTYVPTALDMYTTCLRDP-----VFWKIMKRVMNSFVLFKNMLPSYT 170
SY Y ++ + + ++ CL D VFWK + F+L K +LP Y+
Sbjct: 464 SYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS 519
>11_01_0104 - 781471-781888,781994-782101,782195-782511
Length = 280
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 435 MGRLMSINDKRLDMLEIDSFVYKLDT---GKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 605
+G ++S +DK + MLE+ KL GK + S++ H + E+ + + K +
Sbjct: 51 LGDILSCSDKAISMLELGGDTKKLTNLVGGKRKGDKHSMDNHNLEEEAKESVSKRRKNAE 110
Query: 606 TTGT 617
TG+
Sbjct: 111 HTGS 114
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 18 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKIMKRVMNSFVLFKNMLPSYT 170
SY Y ++ + + ++ CL D + FWK + F+L K +LP Y+
Sbjct: 449 SYEAYRKQQHRWHSGPMQLFRLCLPDIIRCKIAFWKKANLIFLFFLLRKLILPFYS 504
>05_04_0032 +
17363039-17363436,17363626-17363936,17364058-17364120,
17364697-17365181,17365772-17366122
Length = 535
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +3
Query: 294 QKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD---AVVRIFIGPKYDCMGRLMSINDK 464
QK ++ M + R +HQ K ++ +D AVV G DC+ M ND
Sbjct: 325 QKIQNQMTCCKKDGRRSHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDCVLECMKKNDA 384
Query: 465 RLDMLEID--SFVYKLDTGKNNIVRSS 539
+ D ++ D ++ GK+N + ++
Sbjct: 385 QEDAVQSDLNGITIEMFCGKDNFLTNA 411
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 616 VPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLPVS 506
VP + + + V LC PC+ + +T++F+ +S
Sbjct: 717 VPFRNSKLTYLLQVSDLCKWMPCLGGDSKTLMFVNIS 753
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 135 FVLFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDM 254
F++ N Y + L+FP VKV ++ E + D D+
Sbjct: 420 FMVLNNFFSDYPDKPLEFPSVKVNQIELESNIAEEDLDDL 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,462,940
Number of Sequences: 37544
Number of extensions: 315961
Number of successful extensions: 952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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