Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F11
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088) 29 4.3
SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_12341| Best HMM Match : Death (HMM E-Value=3.3e-08) 28 7.5
SB_23528| Best HMM Match : RVT_1 (HMM E-Value=0.00042) 27 9.9
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 27 9.9
>SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 496 SINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVS 603
S+NS + + ++ RC +S D L+TYW+KV+
Sbjct: 229 SLNSCVSCISQASRADRCLPVSRSDSILETYWRKVN 264
>SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 99 VFWKIMKRVMNSFVLFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDMDITNALYL 278
V W RV + K + S+ R+E DFP + +E E +VT + + +TN L
Sbjct: 817 VEWSCDNRVQLNADKCKELRISFARQERDFPPISIEGKEIE-VVTSVKLVRLTLTNNLTW 875
Query: 279 DQ--AEMQKKKSDMVY 320
+ E+ KK S +Y
Sbjct: 876 NDHVTEVTKKASKRLY 891
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +3
Query: 141 LFKNMLPSYTREELDFPGVKVERVVSEKMVTFMDEYDMDITNALYLDQAEMQKKKSDMV 317
L ++ L + E+ D V+ RV+SE+ + + D+D +++YL + ++K+ V
Sbjct: 505 LSQHTLELSSEEDHDMDDVRNSRVLSEEARNILSDLDLDNNHSVYLGGLLVTEEKAPAV 563
>SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 197 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 102
D+R KF AS R FE H R+ HY P+
Sbjct: 2 DSRGSKFFASSFR--TFENHRRISSGRHYFPK 31
>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
Length = 329
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 24 NQYNMDKYTYVPTALDMYTTCLRDPVFWKIM 116
NQ NM ++ VPT ++ TCL +F +M
Sbjct: 290 NQCNMSEHYRVPTRSEITKTCLEPNIFQNLM 320
>SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 197 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 102
D+R KFLA R FE H R+ HY P+
Sbjct: 2 DSRGSKFLAGSFR--TFENHRRISSDRHYFPK 31
>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1420
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +3
Query: 315 VYVARMRRLNHQPFKVSIDVMSDKAVDAVVRIFIGPKYDCMGRLMSINDKRLDMLEID 488
V++A + + + +P S + + ++ IGP + +GR + +++ LD +E D
Sbjct: 1097 VFIALLVKTSSEPLPKSGSSIVSRDTLMLLAREIGPAWKALGRALLLDNAELDQIEAD 1154
>SB_607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 197 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 102
D+R KF AS R FE H R+ HY P+
Sbjct: 2 DSRGSKFFASSFR--TFENHRRISSDRHYFPK 31
>SB_12341| Best HMM Match : Death (HMM E-Value=3.3e-08)
Length = 194
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 414 IGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTGK 518
IG ++ +GR++ + D LDM++ D K + K
Sbjct: 117 IGKRWKALGRVLRLKDSELDMIDEDESKLKEKSNK 151
>SB_23528| Best HMM Match : RVT_1 (HMM E-Value=0.00042)
Length = 445
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 454 SMTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWK-KVSTQLE 615
S+ + + C +S+ ++ + L + R +C AL +D YW+ KV ++
Sbjct: 27 SLLDLVGCVRSLETASRAVLCHQAVISKRQKCLALFGKDSQQFCYWRNKVQVHIK 81
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Frame = +3
Query: 180 LDFPGVKVERVVSEKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMRRLNHQPFK 359
+DFP +KV ++V + +VT +D + + ++ L A++ K+ + +++LN + +K
Sbjct: 747 VDFPAIKVRQIVKDALVT-LDSHSYEPNDSALL--AKLMSKR----ILDEVKQLNVERYK 799
Query: 360 ----VSIDVMSDKAVDAVVRIFIGPKYD-CMGRLM 449
VSI + + + R +YD C+ M
Sbjct: 800 LVCLVSIGSKNRQGMRIASRCLWNTEYDTCISETM 834
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,654,844
Number of Sequences: 59808
Number of extensions: 390388
Number of successful extensions: 1195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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