Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F11
         (647 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK027491-1|BAB55151.1|  204|Homo sapiens protein ( Homo sapiens ...    37   0.071
BC014409-1|AAH14409.1|  204|Homo sapiens phosphopantothenoylcyst...    36   0.094
AY358848-1|AAQ89207.1|  204|Homo sapiens MDS018 protein.               36   0.094
M29063-1|AAA36576.1|  303|Homo sapiens protein ( Human hnRNP C2 ...    30   8.2  
BC007052-1|AAH07052.1|  306|Homo sapiens heterogeneous nuclear r...    30   8.2  
AK223517-1|BAD97237.1|  256|Homo sapiens Heterogeneous nuclear r...    30   8.2  
AB209527-1|BAD92764.1|  313|Homo sapiens Heterogeneous nuclear r...    30   8.2  

>AK027491-1|BAB55151.1|  204|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14585 fis, clone NT2RM4001611, weakly similar to
           SIS2 PROTEIN. ).
          Length = 204

 Score = 36.7 bits (81), Expect = 0.071
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +3

Query: 156 LPSYTREELDFPGVKVERVVSEKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMR 335
           LP    + LD PG++V  V +E+   F    D+ +T     D+ EM K +SD V    +R
Sbjct: 33  LPLLVSKLLDIPGLEVSVVTTERAKHFYSPQDIPVTLYSDADEWEMWKSRSDPVLHIDLR 92

Query: 336 R 338
           R
Sbjct: 93  R 93


>BC014409-1|AAH14409.1|  204|Homo sapiens
           phosphopantothenoylcysteine decarboxylase protein.
          Length = 204

 Score = 36.3 bits (80), Expect = 0.094
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +3

Query: 156 LPSYTREELDFPGVKVERVVSEKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMR 335
           LP    + LD PG++V  V +E+   F    D+ +T     D+ EM K +SD V    +R
Sbjct: 33  LPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIPVTLYSDADEWEMWKSRSDPVLHIDLR 92

Query: 336 R 338
           R
Sbjct: 93  R 93


>AY358848-1|AAQ89207.1|  204|Homo sapiens MDS018 protein.
          Length = 204

 Score = 36.3 bits (80), Expect = 0.094
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +3

Query: 156 LPSYTREELDFPGVKVERVVSEKMVTFMDEYDMDITNALYLDQAEMQKKKSDMVYVARMR 335
           LP    + LD PG++V  V +E+   F    D+ +T     D+ EM K +SD V    +R
Sbjct: 33  LPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIPVTLYSDADEWEMWKSRSDPVLHIDLR 92

Query: 336 R 338
           R
Sbjct: 93  R 93


>M29063-1|AAA36576.1|  303|Homo sapiens protein ( Human hnRNP C2
           protein mRNA. ).
          Length = 303

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 501 KLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 605
           K++ GK  + RS+ EM+G + + P    +L   FD
Sbjct: 89  KVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFD 123


>BC007052-1|AAH07052.1|  306|Homo sapiens heterogeneous nuclear
           ribonucleoprotein C (C1/C2) protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 501 KLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 605
           K++ GK  + RS+ EM+G + + P    +L   FD
Sbjct: 89  KVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFD 123


>AK223517-1|BAD97237.1|  256|Homo sapiens Heterogeneous nuclear
           ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2) variant
           protein.
          Length = 256

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 501 KLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 605
           K++ GK  + RS+ EM+G + + P    +L   FD
Sbjct: 39  KVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFD 73


>AB209527-1|BAD92764.1|  313|Homo sapiens Heterogeneous nuclear
           ribonucleoproteins C1/C2 variant protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 501 KLDTGKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 605
           K++ GK  + RS+ EM+G + + P    +L   FD
Sbjct: 96  KVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFD 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,207,180
Number of Sequences: 237096
Number of extensions: 1762498
Number of successful extensions: 4189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4188
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)