Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F10
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   0.57 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    23   4.1  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   4.1  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    23   5.4  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    23   5.4  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    23   7.1  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    23   7.1  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    23   7.1  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    23   7.1  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    22   9.4  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 16  PIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEISRS 174
           P   PQ+ + +QN +  +   +  G P  K V+ +  T        DSDS++S S
Sbjct: 777 PESPPQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLSCS 831


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 165 NFTV*IELPRTSSGADTKDKF 103
           ++T+ ++ PR+SSG   K KF
Sbjct: 244 DYTINLDAPRSSSGKYWKQKF 264


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 13  APIYAPQNRDPLQNADAAINY--WIQNGAPTHKLVL 114
           +PI +PQN   LQN D A  +  W     P   L +
Sbjct: 592 SPISSPQNIVALQNMDPAAGWGEWFAVSIPVSLLCI 627


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 7   YTAPIYAPQNRDPLQNADAAINYWIQNGAPTH 102
           Y   +  P N    +NA  A+NY+ +  A  H
Sbjct: 458 YLKTVIFPTNEQTHRNARIAMNYYSRAAARNH 489


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 40  DPLQNADAAINYWIQNGAPTHKLVLGISTTGRT 138
           +P+Q    AI+  +  G    +L++G   TG+T
Sbjct: 172 EPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKT 204


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 794

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 19 IYAPQNRDPLQNADAAINYWIQNGAP 96
          +Y P  +DP    + A++  + N AP
Sbjct: 7  VYVPPPKDPPSYEEVALHSALNNSAP 32


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 86  MVRLPTNLSLVSAPLDVRGS 145
           M R+P  LS VS   D +GS
Sbjct: 57  MTRIPEELSRVSLQFDSKGS 76


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 158 LSESSFHVRPVVLIPRTSLWV 96
           +S+ +FH+ P ++ P +  WV
Sbjct: 350 VSQVNFHIVPFIMDPTSHNWV 370


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 27  TAEPRSSTKRRRCYKLLDS 83
           T EPR +  +R+  KL+DS
Sbjct: 275 TTEPRQTHWKRKLLKLIDS 293


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 177 GTPGNFTV*IELPRTSSGA 121
           G P NFTV I   R S+GA
Sbjct: 882 GAPTNFTVPIRDMRLSAGA 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.127    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,248
Number of Sequences: 5004
Number of extensions: 11571
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)