Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F10
         (177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       33   0.033
04_03_0649 - 18402976-18403220,18403305-18404499                       33   0.033
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    29   0.70 
12_02_0292 + 16979550-16980662,16983249-16983731                       27   1.6  
05_03_0191 - 9521496-9521921                                           27   1.6  
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439...    27   2.8  
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336...    26   4.9  
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428...    26   4.9  
11_06_0204 + 21191611-21192807                                         25   8.6  
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147...    25   8.6  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 13  APIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL 147
           AP+Y   ++D   +A   +  W+  G P  KLV+GI   GR+W L
Sbjct: 249 APLY---DKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFL 290


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 7   YTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL 147
           + AP+Y   +R    +A   +  W+  G P  K+V+GI   GR+W L
Sbjct: 248 FDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMGIPLYGRSWFL 291


>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 41  ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 151
           ++Y +PT++ + GF   +    LSLV+A L+  GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329


>12_02_0292 + 16979550-16980662,16983249-16983731
          Length = 531

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 99  PQTCPWYQHHWTYVEARFR 155
           P+   W QHHWT    R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523


>05_03_0191 - 9521496-9521921
          Length = 141

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 87  WCAYPQTCPWYQHHWTYVEARFR 155
           W   P+   W++ HWT   AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141


>04_04_0345 -
           24542869-24543540,24543725-24543805,24543845-24543910,
           24543991-24544098,24545101-24545436,24545516-24545586,
           24546105-24546252
          Length = 493

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 41  ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 151
           ++Y +PT++ + GF   +L   LSL+ A ++  G+ +
Sbjct: 281 VMYYSPTIVQMAGFTSNKLALLLSLIVAGMNAAGTIV 317


>05_05_0393 -
           24632570-24632629,24633212-24633370,24633496-24633612,
           24633697-24633831,24634140-24634337,24634449-24634529,
           24634845-24635141,24635231-24636013,24636589-24636765
          Length = 668

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 89  VRLPTNLSLVSAPLDVRGSSIQTVKFPG 172
           +R P N  LVS   ++  S++Q +KF G
Sbjct: 83  LRYPLNEELVSEAPNINDSAVQLIKFHG 110


>04_04_0481 -
           25541355-25541849,25541933-25542535,25542730-25542837,
           25542925-25543260,25543391-25543461,25543692-25543824
          Length = 581

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 41  ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 151
           ++Y +PT++ + GF        LSL+++ L+  GS +
Sbjct: 296 VMYYSPTIVQLAGFASNNTAMALSLITSGLNAIGSIV 332


>11_06_0204 + 21191611-21192807
          Length = 398

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 79  IQNGAPTHKLVLGISTTGRTWKLD 150
           +   A  H+LV+    TGR W+LD
Sbjct: 127 LSRDAAEHELVVWDPMTGRRWRLD 150


>09_06_0243 -
           21813223-21813456,21814266-21814367,21814501-21814701,
           21815591-21815716,21815791-21816072,21816218-21816388,
           21816838-21816999,21817404-21817467,21818136-21818503
          Length = 569

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 58  DAAINYWIQNG 90
           D++INYWI NG
Sbjct: 318 DSSINYWIHNG 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.127    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,916,093
Number of Sequences: 37544
Number of extensions: 77227
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)