Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F10
         (177 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              38   0.001
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              33   0.035
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.047
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.14 
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   1.3  
SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)               28   1.3  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               27   1.8  
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)                   26   4.1  
SB_15719| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 64  AINYWIQNGAPTHKLVLGISTTGRTWKL 147
           A  YWI  GAP  K+ LG+ T GR +KL
Sbjct: 354 AAQYWIDKGAPASKIALGLGTYGRAFKL 381


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 46  LQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDS 153
           + N D      I+NG P +K+VLG+ T GR + L+S
Sbjct: 634 MNNRDTWEKPGIRNGMPANKIVLGLGTYGRAFGLES 669


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 40  DPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL 147
           DPL     A++ WI  G P++K+ LGI   GR++ L
Sbjct: 234 DPL-TVTHAVDLWIAGGMPSNKIALGIPLYGRSFTL 268


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 64  AINYWIQNGAPTHKLVLGISTTGRTWKLDSDSE 162
           A+ YW++ G P  K+ LG++  G  ++L   ++
Sbjct: 623 AVKYWMEKGMPCGKIALGMANYGHAFELSDPTK 655


>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 628

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 78  DSKWCAYPQTCPWYQHHWTYVEA 146
           D + C+YP T PW    WT + +
Sbjct: 80  DERNCSYPTTGPWTTRPWTPISS 102


>SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)
          Length = 430

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 21  LRTAEPRSSTKRRRCYKLLD-SKWCAYPQTCPWYQHHWTYVEAR 149
           LR + PRS  ++   +      K+ ++P   P  +HHWT  E R
Sbjct: 26  LRNSTPRSKARKPLQFTSPSHGKFKSFPVKSPVRRHHWTLEEER 69


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 51  KRRRCYKLLDSKWCAYPQTCP 113
           K  RCY L DSK C  P   P
Sbjct: 327 KAPRCYNLCDSKTCIIPTKAP 347


>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
          Length = 650

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 21  LRTAEPRSSTKRRRCYKLLDSKWCAYPQTCPWYQHHWT 134
           L T EP      + C   L S  C Y  +C +++HH T
Sbjct: 92  LETKEPDIG---KECVNFLKSGKCPYGISCRYWKHHTT 126


>SB_15719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 90  TILNPVIYSSVGVL*RIAVLRCVNR 16
           T+ NP+IYS +    R A+L+ V R
Sbjct: 325 TLANPIIYSGINRQFRAAILKFVLR 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.127    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,735,394
Number of Sequences: 59808
Number of extensions: 91358
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 16,821,457
effective HSP length: 38
effective length of database: 14,548,753
effective search space used: 290975060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)