Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F09
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_58859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 322 NKKKRRFISKYRLRNHHADVSHVIKNKQTREGL 224
           N+K+ +F+ KYRLRN     SH +  ++  EGL
Sbjct: 68  NEKQGKFVFKYRLRN---GTSHSLSFRKGIEGL 97


>SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 343 ISVSIVLNKKKRRFISKYRLRNHHA 269
           ++VSI +NKKK R++ K RL +  A
Sbjct: 855 LNVSIKVNKKKPRYVYKLRLTDFDA 879


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,093,000
Number of Sequences: 59808
Number of extensions: 237502
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)