Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_F09
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.6  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 130 NRYVKVYIYNYNTFYLKV 183
           N Y K+Y  NY   Y  +
Sbjct: 94  NNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 130 NRYVKVYIYNYNTFYLKV 183
           N Y K+Y  NY   Y  +
Sbjct: 94  NNYKKLYCNNYKKLYYNI 111


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 130 NRYVKVYIYNYNTFYLKV 183
           N Y K+Y  NY   Y  +
Sbjct: 94  NNYKKLYCNNYRKLYYNI 111


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 127 YNRYVKVYIYNYNTFYLKVR 186
           YN     Y  NYNT Y K++
Sbjct: 94  YNNNYNNYNNNYNTNYKKLQ 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,497
Number of Sequences: 438
Number of extensions: 2558
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)