Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_F08
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 285 3e-78
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 282 2e-77
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 124 6e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 82 4e-17
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.68
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 3.6
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 4.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 8.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 8.4
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 25 8.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 285 bits (699), Expect = 3e-78
Identities = 127/165 (76%), Positives = 144/165 (87%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
DIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++S
Sbjct: 222 DIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK+
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
+RTIQFVDWCPTGFK+GI Y+PP VPG +A V RAVCMLSNTT
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTT 386
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 282 bits (691), Expect = 2e-77
Identities = 126/165 (76%), Positives = 143/165 (86%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
DIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++S
Sbjct: 218 DIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
A KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK
Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKA 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTT 496
KRTIQFVDWCPTGFK+GI +PP + G ++A V RAVCMLSNTT
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTT 382
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 124 bits (300), Expect = 6e-30
Identities = 54/142 (38%), Positives = 86/142 (60%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
I+ P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ +
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAI 276
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336
Query: 365 RTIQFVDWCPTGFKVGINYQPP 430
+ FV+W P + PP
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPP 358
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 82.2 bits (194), Expect = 4e-17
Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Frame = +2
Query: 8 ERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS-- 181
+ PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P +
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQ 280
Query: 182 -AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATI 355
E + +V ++ P NQMV +P + +++ + +G+ P DV+ ++ I
Sbjct: 281 VEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340
Query: 356 KTKRTIQFVDWCPTGFKVGINYQPPTV 436
+ +R F+ W P +V ++ + P +
Sbjct: 341 RERRYASFIPWGPASIQVALSKKSPYI 367
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.68
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 221 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 346
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 100 DIEGAVETQRGGNR*YDLADKTIEVGVGRAFN 5
DIE E GN+ ++L +K I++ G+ FN
Sbjct: 58 DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 3 ILNARPTPTSIVLSARSYHRL 65
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 352 GSDSRVDVLGHDVTAVQHAAGHVFAVT 272
G+D + GH V +Q A G VF+ T
Sbjct: 421 GADEKPKYAGHVVAVLQRAPGQVFSGT 447
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 475 DGALHLGEITAGHHGRGLVVDTDLETGRTPVHELDGALGLDGSDSRVDVL 326
D + G+IT G V++ + ELD L DGS+S VL
Sbjct: 958 DDVSNSGDITMGEEPSEPVINFEKFGVEVDYDELDEELRNDGSESMASVL 1007
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 89 ALNVDLTEFQTNLVPYPRIHFPLVT 163
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -3
Query: 352 GSDSRVDVLGHDVTAVQHAAGHVFAVTRVTFHHLVGGLEASVRDLRYREL 203
G D +D G D T GH A + +G L+ + R +EL
Sbjct: 41 GLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGTEE-RLKEL 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,981
Number of Sequences: 5004
Number of extensions: 38870
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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